Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h13
         (214 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   2.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   5.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   8.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 135 CWSTNTNL 112
           CW TNT L
Sbjct: 323 CWDTNTEL 330


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = +2

Query: 17 VLVIFYSLILVIT 55
          V ++FYS++++I+
Sbjct: 39 VSIVFYSVLMIIS 51


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 177 FKIHYNNKC 151
           +K +YNN C
Sbjct: 96  YKYNYNNNC 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,167
Number of Sequences: 438
Number of extensions: 255
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)