Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h10
         (108 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   2.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   2.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   5.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   7.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 94  NAIRHFVGMVDWNRFNLFCSSRPYLMILTAI 2
           +A RHF  +++W  F  F     Y++IL  +
Sbjct: 399 SAWRHFAAIIEWLSF--FIVIFTYIIILITL 427


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 78  LWAWLIGIVSIYF 40
           +WAW   I ++YF
Sbjct: 658 MWAWNFTIPNMYF 670


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 78  LWAWLIGIVSIYF 40
           +WAW   I ++YF
Sbjct: 658 MWAWNFTIPNMYF 670


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 90  LFVTLWAWL 64
           LFV  W WL
Sbjct: 228 LFVLWWGWL 236


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 62  INHAHKVTNSINQKK 106
           +N    VTNS +QKK
Sbjct: 345 LNSTCSVTNSPHQKK 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,152
Number of Sequences: 438
Number of extensions: 266
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)