Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17h09
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415... 29 0.77
09_04_0013 - 13726386-13726848,13726932-13727140,13727223-137273... 29 1.0
11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906 28 1.3
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 27 2.3
07_01_0126 - 947072-948687,949454-949627,950117-951572 27 3.1
02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174 27 3.1
12_01_0198 - 1461305-1463812 27 4.1
11_01_0192 - 1523572-1526097 27 4.1
12_01_0747 - 6724513-6724801,6725708-6726174 26 7.2
12_01_0601 - 4907397-4907685,4908592-4909100 26 7.2
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812... 26 7.2
10_01_0087 - 1072279-1072762,1074884-1075020,1075379-1075479,107... 26 7.2
07_01_0123 - 927691-929223,930050-930268 26 7.2
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 26 7.2
03_01_0056 - 471338-471919,472013-472213 26 7.2
02_01_0005 + 34436-34498,34578-35120,35566-35643,35823-35915,360... 26 7.2
02_04_0509 - 23554609-23555241,23555371-23556318 25 9.5
>02_02_0444 +
10340927-10341063,10341157-10341241,10341480-10341537,
10343738-10345885,10345943-10346388
Length = 957
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 86 IVKTSIIFGAGVYTGVYVAQNYQIEKVE 169
+ K S F G+ GVYVAQNY + ++
Sbjct: 3 LFKGSFTFMVGMGCGVYVAQNYNVPNIK 30
>09_04_0013 -
13726386-13726848,13726932-13727140,13727223-13727323,
13727515-13727740
Length = 332
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 53 ENIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQIEKVED 172
++++ GFF + VK + AGV Y++ EK D
Sbjct: 82 QDVFLHGFFSAAVKLPAYYAAGVVVAFYLSNGDTYEKTHD 121
>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
Length = 618
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 35 RYFLYFENIYRMGFFFSIVKTSIIFGAGVYT 127
R+ LY+ +I +FS + T I F G+YT
Sbjct: 537 RFLLYYRSITMKLMWFSYMATIIAFATGLYT 567
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 38 YFLYFENIYRMGFFFSIVKT 97
+F+ F+N + MGFFF ++ T
Sbjct: 440 HFILFQNSFEMGFFFWVLAT 459
>07_01_0126 - 947072-948687,949454-949627,950117-951572
Length = 1081
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 293 ITILFHNSCSHFPNFNLFFHLVLQKVLISRKL 198
+ ++F NSC H HL+L K L R++
Sbjct: 718 VFVMFLNSCPHLCRQPYSMHLLLDKCLFGRQM 749
>02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174
Length = 340
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 56 NIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQIEKVED 172
++Y+ GFF + +K + AGV Y + IEK D
Sbjct: 73 SMYQHGFFSASIKLPSDYTAGVVVAFYTSNGDVIEKRHD 111
>12_01_0198 - 1461305-1463812
Length = 835
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 74 SPFYIYFQNTRNIFWCCSR 18
+P+Y Y+QN RNI++ +R
Sbjct: 217 NPYYSYWQNNRNIYYNFTR 235
>11_01_0192 - 1523572-1526097
Length = 841
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 74 SPFYIYFQNTRNIFWCCSR 18
+P+Y Y+QN RNI++ +R
Sbjct: 216 NPYYSYWQNNRNIYYNFTR 234
>12_01_0747 - 6724513-6724801,6725708-6726174
Length = 251
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 95 TSIIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVKSKLSEVQDGKKD*N*ENGNRN 274
T+ +FG G+ + Q + D ALFEK + + + E++ KD + E GN +
Sbjct: 142 TTRVFGGGMRR---LTQRTMLVDDSDHTALFEKKASVKQIGIEEMRGKAKDVSSEEGN-S 197
Query: 275 YEIK 286
E+K
Sbjct: 198 EEVK 201
>12_01_0601 - 4907397-4907685,4908592-4909100
Length = 265
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 95 TSIIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVKSKLSEVQDGKKD*N*ENGNRN 274
T+ +FG G+ + Q + D ALFEK + + + E++ KD + E GN +
Sbjct: 156 TTRVFGGGMRR---LTQRTMLVDDSDHTALFEKKASVKQIGIEEMRGKAKDVSSEEGN-S 211
Query: 275 YEIK 286
E+K
Sbjct: 212 EEVK 215
>11_02_0083 -
8116997-8117590,8118342-8118745,8119073-8119671,
8120226-8120266
Length = 545
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 38 YFLYFENIYRMGFFFSIVKTSIIFGAGVYT 127
+ LY+ + + +F+ + T+I F G+YT
Sbjct: 465 FLLYYRSFTKKLMWFAYMATTIAFATGLYT 494
>10_01_0087 -
1072279-1072762,1074884-1075020,1075379-1075479,
1075581-1075806
Length = 315
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 53 ENIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQIEKVED 172
++ Y GFF + +K + AGV Y++ EK D
Sbjct: 82 QDAYLHGFFSASIKLPPDYAAGVVVAFYMSNGDVYEKTHD 121
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 287 ILFHNSCSHFPNFNLFFHLVLQKVLISRKL 198
++F NSC H HL+L + L R++
Sbjct: 221 LMFFNSCPHLCRQPYSMHLLLDRCLFGRQM 250
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +2
Query: 38 YFLYFENIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVKS 214
+F+Y +G F ++ S GA + T V++ N++ + +DP FE+ + F++S
Sbjct: 54 WFIY--TFIGLGVFMCLLTCS---GA-ITTDVFLNSNWEEDFPDDPSGKFEEFKDFIRS 106
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 62 YRMGFFFSIVKTSIIFGAGVYTGVYVAQN 148
YR G+F + +K + AGV T Y++ N
Sbjct: 43 YRNGYFGASIKVPSGYTAGVNTAFYLSNN 71
>02_01_0005 +
34436-34498,34578-35120,35566-35643,35823-35915,
36086-36181,36709-36762,36856-37059,37209-37360,
37365-37440,38185-38193,38577-38708,39042-39107,
39885-40184,40332-40640,40976-40996
Length = 731
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 284 LFHNSCSHFPNFNLFFH 234
LF+ S H+ NFNLF H
Sbjct: 558 LFNVSICHYNNFNLFHH 574
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 104 IFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVKSKLSEVQDGKKD 247
IFGAG T ++ Q E + +P+A+ KAQ ++S L Q +D
Sbjct: 318 IFGAGSDTSSHMVQWVLSELMRNPEAM-HKAQIELRSTLQGKQMVSED 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,629,624
Number of Sequences: 37544
Number of extensions: 76269
Number of successful extensions: 186
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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