Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17h09
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-10|AAY55842.1| 50|Caenorhabditis elegans Hypothetical... 34 0.024
U23516-8|AAG38879.1| 167|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr... 26 4.8
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr... 26 4.8
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein. 26 4.8
Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 26 6.4
U21322-8|AAA62544.1| 662|Caenorhabditis elegans Abnormal embroy... 26 6.4
Z73103-6|CAE17680.1| 55|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 25 8.4
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 25 8.4
AF036705-3|AAB95171.1| 556|Caenorhabditis elegans Hypothetical ... 25 8.4
>AF067211-10|AAY55842.1| 50|Caenorhabditis elegans Hypothetical
protein B0205.12 protein.
Length = 50
Score = 33.9 bits (74), Expect = 0.024
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 101 IIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVK 211
+ G G Y G Y AQNY+++K+ + + + ++K
Sbjct: 8 LTMGLGAYAGAYFAQNYELQKLPSASEMMKNVEDYLK 44
>U23516-8|AAG38879.1| 167|Caenorhabditis elegans Hypothetical
protein B0416.2 protein.
Length = 167
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 80 FSIVKTSIIFGAGVYTGVYVAQNYQIEKV-EDPKALF 187
FS+ K S+IF A + VAQ+ Q+E V PK F
Sbjct: 3 FSVTKFSLIFVALLLAEALVAQSSQLESVTRKPKPFF 39
>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 299 QLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 195
++I LFH +H N + +H V K +++ K+V
Sbjct: 745 EVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778
>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 299 QLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 195
++I LFH +H N + +H V K +++ K+V
Sbjct: 745 EVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778
>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
Length = 1293
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 299 QLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 195
++I LFH +H N + +H V K +++ K+V
Sbjct: 698 EVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 731
>Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical
protein F35E2.6 protein.
Length = 698
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 115 CTKYYRGFNDRKEKAHSIYIF 53
C YY+ F DR +K Y+F
Sbjct: 517 CINYYKSFRDRVKKEKPDYLF 537
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 107 FGAGVYTGVYVAQNYQIEKVEDPKAL 184
FGA V+ Y +EK+EDP L
Sbjct: 259 FGARKNFNVHHTMKYYVEKIEDPSKL 284
>U21322-8|AAA62544.1| 662|Caenorhabditis elegans Abnormal
embroygenesis protein 8 protein.
Length = 662
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 107 FGAGVYTGVYVAQNYQIEKVEDPKALFE 190
FG + T + YQ+E VE+ KALF+
Sbjct: 224 FGWELNTEAETMRQYQLEPVEEGKALFK 251
>Z73103-6|CAE17680.1| 55|Caenorhabditis elegans Hypothetical
protein C08F8.9 protein.
Length = 55
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 32 KRYFLYFENIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNY 151
K F +Y FF+S+ K I FG GV V++ +
Sbjct: 12 KTRFEIVNTVYNDPFFWSVFKGVIGFGVGVVVARSVSEEW 51
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 173 PKALFEKAQAFVKSKLSEVQDGKKD 247
P AL +K + K K E +DGKKD
Sbjct: 952 PVALGKKEKLLKKEKKKEKKDGKKD 976
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 173 PKALFEKAQAFVKSKLSEVQDGKKD 247
P AL +K + K K E +DGKKD
Sbjct: 952 PVALGKKEKLLKKEKKKEKKDGKKD 976
>AF036705-3|AAB95171.1| 556|Caenorhabditis elegans Hypothetical
protein F37C4.5a protein.
Length = 556
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 121 NSCTKYYRGFNDRKEKAHSIYIFKIQEISFGVVQDIFRI 5
++C + R F + E AH K+Q + F +VQD R+
Sbjct: 27 SNCAELKRTF--QVELAHGYNEVKVQNLPFDLVQDSIRV 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,450,089
Number of Sequences: 27780
Number of extensions: 84745
Number of successful extensions: 310
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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