Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h05
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-11|CAA90252.1|  442|Caenorhabditis elegans Hypothetical p...   105   2e-23
Z49967-12|CAI70401.1|  396|Caenorhabditis elegans Hypothetical p...   100   8e-22
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    33   0.14 
Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    29   2.9  
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    29   3.9  
AL132851-2|CAB60412.1|  180|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z49967-11|CAA90252.1|  442|Caenorhabditis elegans Hypothetical
           protein F54C9.6a protein.
          Length = 442

 Score =  105 bits (253), Expect = 2e-23
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 1/165 (0%)
 Frame = +3

Query: 168 SLAQNPYXXXXXXXXXXXXXXXILRKGLQTSMVLFRRHCMITLEVPCRDKSYQWLLQWIT 347
           +L QNPY                LR+  Q S   FRR  MI L++   D +Y WLL +I 
Sbjct: 27  NLNQNPYFNAGAGLAGIGIAMSFLRRTAQISNTYFRRRFMINLQINNEDAAYPWLLDFIN 86

Query: 348 QKGARKTQHLSVETSFEQKDSGQIRTKYDFIPSVGQHFFRYGGTWIRVDRTREQQTLDLH 527
            + A +T++LS  T   Q +SG+      F+P  G HFF +   WI+V+R RE+Q +   
Sbjct: 87  NRSATQTRNLSANTVVHQAESGKTELSISFLPGHGTHFFVHDYRWIKVERQREKQVIQRD 146

Query: 528 -MGIPWETVTLTSFGRNKQLYYGILEEARTMALKQHEGMTVMYTA 659
            +  P+ETVTLT+ G + + +  +LE++   A+   E   V+Y A
Sbjct: 147 GIRTPFETVTLTTLGSDVKFFKRMLEQSAKEAIDNAETGLVIYQA 191


>Z49967-12|CAI70401.1|  396|Caenorhabditis elegans Hypothetical
           protein F54C9.6b protein.
          Length = 396

 Score =  100 bits (240), Expect = 8e-22
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
 Frame = +3

Query: 237 LRKGLQTSMVLFRRHCMITLEVPCRDKSYQWLLQWITQKGARKTQHLSVETSFEQKDSGQ 416
           LR+  Q S   FRR  MI L++   D +Y WLL +I  + A +T++LS  T   Q +SG+
Sbjct: 4   LRRTAQISNTYFRRRFMINLQINNEDAAYPWLLDFINNRSATQTRNLSANTVVHQAESGK 63

Query: 417 IRTKYDFIPSVGQHFFRYGGTWIRVDRTREQQTLDLH-MGIPWETVTLTSFGRNKQLYYG 593
                 F+P  G HFF +   WI+V+R RE+Q +    +  P+ETVTLT+ G + + +  
Sbjct: 64  TELSISFLPGHGTHFFVHDYRWIKVERQREKQVIQRDGIRTPFETVTLTTLGSDVKFFKR 123

Query: 594 ILEEARTMALKQHEGMTVMYTA 659
           +LE++   A+   E   V+Y A
Sbjct: 124 MLEQSAKEAIDNAETGLVIYQA 145


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = -1

Query: 588 NIIACFCQMKLMLPFPMVSPY---AGPKSAVPLYGLLLSMFHHIGKSVG 451
           N+I  FC +++ L F  + PY     P + +P +G++L+ F  IG++VG
Sbjct: 38  NLIQYFCGLQMSLYFTSMWPYLLKLDPTAQLPFFGIILASF-SIGQAVG 85


>Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical
           protein T09F3.5 protein.
          Length = 528

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = +3

Query: 261 MVLFRRHCMITLEVPCRDKSYQWLLQWITQKGARKTQHLSVETSFEQKDSGQ---IR--- 422
           M +FR+  ++ L       S+Q  ++W+   G R+       ++ EQ ++     +R   
Sbjct: 1   MFIFRKVSLLQLPSTSTRSSFQLDIRWL---GPRRESFREFTSNMEQNEANLGKFVRVDT 57

Query: 423 TKYDFIPSVGQHFFRYGGTWIRVDRTREQQTL 518
           T Y F  S G+   +YG  W + D     +TL
Sbjct: 58  TGYSFTDSTGKRIAKYGIYWGKDDTRNGIRTL 89


>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
           protein F32D1.3 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 588 NIIACFCQMKLMLPFPMVSPYAGPKSAVPLYGLLLSMF 475
           N +A +C +   L   M S  + PKS +PLY LLLS+F
Sbjct: 373 NTVA-YCILAAFLA-EMCSKRSSPKSVLPLYILLLSLF 408


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 554 CYRFPWYPHMQVQSLLFPCTVYSYPCST 471
           CY+F  Y  + + ++LF  T+ SY C T
Sbjct: 444 CYKFDGYILLDIYAVLFGFTIASYVCLT 471


>AL132851-2|CAB60412.1|  180|Caenorhabditis elegans Hypothetical
           protein Y53H1B.4 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 188 FWCRFWTFRCRCKCSYSTKRIA 253
           F+C +W  +C  K  Y+  R A
Sbjct: 135 FYCEYWKTKCNVKLEYTVSRFA 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,622
Number of Sequences: 27780
Number of extensions: 311336
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)