Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17h03
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 31 0.12
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 28 1.5
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 27 2.0
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.5
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 27 3.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 4.7
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 25 8.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 8.2
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 25 8.2
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 31.5 bits (68), Expect = 0.12
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Frame = +1
Query: 121 IYFK*IRYKMLSIPERA-AQIIDTQEQQLDEINSRTIFLAGSKNVGKSTLLHMFLEKLET 297
I+ K IR +L + + +I+D L+EI SR FLA G++ ++M+ L+
Sbjct: 1338 IFTKFIRMHLLGYLKGSWLEIVDDLGSLLEEIISRPDFLAKLPKNGRNAAMNMYSCFLD- 1396
Query: 298 PRNTLVLEYSFGRKTNLKQAIDKNVCHIWEYGGKLDMLKNVLPVLPKTKNYYYCIMVDLS 477
+LE S ++T DK + I + L K L Y IMV+ +
Sbjct: 1397 ---LFLLEVSDLKQTECNAQSDKIIKSITYWQSLLFNSKTYQKDLFSLLWYAVYIMVETT 1453
Query: 478 KPKTLLQTIE----ICLHAINETQSISDNCVTNLIILCGKYDLFKNFDTEAKKIV 630
LQ ++ + LH+ I+ C + Y++ K D ++ K V
Sbjct: 1454 TGVVRLQAVDAWRLLFLHSPGYLSDIAKTCNNDPRF---AYEICKTLDNDSDKFV 1505
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 397 FHRIPKYDTRFYQLLA*DLFFFQMNILTQECSVEFLIFPKTYEAVLIYPRF 245
FH PK TRF L+ + FF +++L ++ F I P++ A+ P F
Sbjct: 353 FHWYPKSSTRFAVALSKHIIFFDLDLLN---NISFPI-PRSINAIQQLPCF 399
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 211 INSRTIFLAGSKNVGKSTLLHMFLEKLETPRNTLVLEYSFGRKTNLK 351
I SR I + GS++VGKS+L ++E +E +F + K
Sbjct: 4 IKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYK 50
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 208 EINSRTIFLAGSKNVGKSTLLHMFLEKLETPRNTLV 315
++ SR + L G GK+TL+ + LEK++ ++V
Sbjct: 618 DLKSR-VALVGPNGAGKTTLIKLILEKVQPSTGSVV 652
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 190 QEQQLDEINSRTIFLAGSKNVGKSTLLH 273
++ +L+ IN R L GKSTLLH
Sbjct: 292 KDSELNLINGRRYGLIAPNGSGKSTLLH 319
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 187 TQEQQLDEINSRTIF---LAGSKNVGKSTLLH 273
T EQ+L E+ +TI L G N GKSTLL+
Sbjct: 223 TGEQKLIELELKTICEIGLVGLPNAGKSTLLN 254
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 124 YFK*IRYKMLSIPERAAQIIDTQEQQLDEINSRTIFLAGSKNVGKSTLLHMFLEKLETPR 303
+F ++L P + I D Q + E++S + +NVG+S+L++ + + TP
Sbjct: 1080 FFMPANEEILGSPAKDYDIHD-QSYSVHELHSENM----RENVGQSSLIYNNRDYMNTPM 1134
Query: 304 NTLVLEYS 327
N L +S
Sbjct: 1135 NDFSLSFS 1142
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 358 IDKNVCHIWEYGGKLDMLKNVLPVLPKTKNYYYCIMV 468
+++ V ++E + MLK +PKTK +CI++
Sbjct: 164 LNEGVNEVFETAARASMLKFKPASVPKTKKKKHCILL 200
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 284 SKNI*SSVDLPTFLLPAKKIVRE 216
SKN+ S +DLP L KK+ +E
Sbjct: 391 SKNLLSEIDLPIILANLKKLSKE 413
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 379 IW-EYGGKLDMLKNVLPVLPKTKNYYYCIMVDLSKPKTLLQ 498
+W +G +L L N + +TKN + ++ ++KP LQ
Sbjct: 147 VWMSHGDRLSALPNGYETIGRTKNSPFAVIAHVTKPIIGLQ 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,461
Number of Sequences: 5004
Number of extensions: 59052
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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