Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h03
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     28   6.4  
03_02_0189 - 6253659-6255380                                           28   8.5  

>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 202 LDEINSRTIFLAGSKNVGKSTLLHMFLEKLE 294
           L++ +S  I + G   +GK+TLLH F   LE
Sbjct: 169 LEKADSNIIGIWGQGGIGKTTLLHAFNNDLE 199


>03_02_0189 - 6253659-6255380
          Length = 573

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 430 LPKTKNYYYCIMVDLSKPKTLLQTIEICLHAINETQSI 543
           LP +  +YYCI    SK +  + T+  C+HA+ E Q++
Sbjct: 402 LPPSLEHYYCI----SKAQHKVDTLRRCIHAL-EAQTV 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,826
Number of Sequences: 37544
Number of extensions: 298605
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)