Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17h03
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78411-4|CAB01645.2| 370|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormo... 31 0.82
Z50044-1|CAA90353.2| 184|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81523-8|CAB04245.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z81504-3|CAB04117.2| 349|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 7.7
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 7.7
>Z78411-4|CAB01645.2| 370|Caenorhabditis elegans Hypothetical
protein F02D8.3 protein.
Length = 370
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Frame = +1
Query: 226 IFLAGSKNVGKSTLLHMFLEKLETPRNTLVLEYSFGRKTNLKQAIDKNVCHIWEYGGKLD 405
I AG++ GKS+ + FLE+ E ++++ LEY++ R+T + K++ ++WE GG
Sbjct: 48 IIFAGNRKSGKSSFMLNFLERKEDLKDSVGLEYTYARRT---RGNVKDIANLWELGGGAT 104
Query: 406 MLKNVLPVLPKTKNYYYC---IMVDLSKPKTLLQTIE 507
+ + +L V KN C +++D++ + TIE
Sbjct: 105 VTE-LLSVPITMKNVEICSLILLLDMTNLDEMWITIE 140
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 553 CVTNLIILCGKYDLFKNFDTEAKKIVCSTLRSVALLNDAHLMFYSSQESMLVK 711
C + I+ KYD F+NF++E ++ +C LR +A A+LM +SS+ K
Sbjct: 186 CPIPVTIVASKYDEFQNFESEKRRHLCQFLRFLAYSYGANLMMFSSRMEQFPK 238
>AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 135 protein.
Length = 362
Score = 31.1 bits (67), Expect = 0.82
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Frame = +1
Query: 247 NVGKSTLLHMFLEKLETPRNTLVLEYSFGRKTNLKQAIDKNVCHIWEYG------GKLDM 408
NV K +H+F + + T++ + SF K ++ + + + +W+ G +++
Sbjct: 228 NVKKEEAVHLFKPYWDEYKRTVIDDVSF-LKPDVYEFLTVSGLILWDTGLDGLSDQSIEI 286
Query: 409 LKNVLPVLPKTKNYYYCIMVDLSKPKTLLQTIEICLHAINETQSISDNCVTNLIILCGKY 588
+ + L ++YY + L P L I + L ++ + S + +CG +
Sbjct: 287 CRAMREKLVGEIHFYYKNVKKLDDPCLRLGQIMMILSSVQK----SFGKYQEELQMCGFF 342
Query: 589 DLFKNFDTEAKKIVCSTLR 645
+++KN D EA I+ +L+
Sbjct: 343 EIYKNLDPEACLIINDSLQ 361
>Z50044-1|CAA90353.2| 184|Caenorhabditis elegans Hypothetical
protein F22B5.1 protein.
Length = 184
Score = 30.3 bits (65), Expect = 1.4
Identities = 32/123 (26%), Positives = 52/123 (42%)
Frame = +1
Query: 226 IFLAGSKNVGKSTLLHMFLEKLETPRNTLVLEYSFGRKTNLKQAIDKNVCHIWEYGGKLD 405
I + G N GK+TL+ FL++ P +T+ F KT + N +W+ GG+
Sbjct: 19 ILILGLDNAGKTTLMKKFLDE---PTDTIEPTLGFDIKTVHFKDFQLN---LWDVGGQKS 72
Query: 406 MLKNVLPVLPKTKNYYYCIMVDLSKPKTLLQTIEICLHAINETQSISDNCVTNLIILCGK 585
+ T + +VD S + LLQ E + E + +L++L K
Sbjct: 73 LRSYWKNYFESTDALIW--VVDSSDRERLLQCSEELKKLLGEERLAG----ASLLVLANK 126
Query: 586 YDL 594
DL
Sbjct: 127 SDL 129
>Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical
protein T01B7.3 protein.
Length = 207
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 226 IFLAGSKNVGKSTLLHMFLEKLETPRNTLVLEYSFGRKTNLKQAIDKNVCHIWEYGGK 399
I L G VGKS+L+ F+E + ++ ++ SF KT + ++ HIW+ G+
Sbjct: 15 IVLLGEGCVGKSSLVLRFVENKFSCKHLSTIQASFQNKTVNVEDCQADL-HIWDTAGQ 71
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 232 LAGSKNVGKSTLLHMFLEKLETPRNTLVLEYSFGRK 339
+ G VGKS LL F ++L P +T L FG K
Sbjct: 11 IIGDGGVGKSNLLLRFTDELFDPIHTTTLGVEFGYK 46
>Z81523-8|CAB04245.1| 290|Caenorhabditis elegans Hypothetical
protein F32H2.8 protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 612 CIKILKQVIFSTQNNQICYT 553
C+KIL+ + FST N+ I YT
Sbjct: 206 CLKILENLEFSTSNSAIMYT 225
>Z81504-3|CAB04117.2| 349|Caenorhabditis elegans Hypothetical
protein F15H9.3 protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 178 IIDTQEQQLDEINSRTIFLAGSKNVGKSTLLHMFLEKLETPRNTLVLEY 324
+I T+E L E+ + T+FL GS ++ S ++ + K T +L++
Sbjct: 268 VIITEEVSLQELATDTMFLVGSHSMCSSAVMILSNPKYRCVLKTKILKF 316
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical
protein T21E8.1b protein.
Length = 1204
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 94 EVKQQIGNQIYFK*IRYKMLSIPERAAQIIDTQEQQLDEINSRTIFLAGSKNVGKSTLLH 273
+V+ ++ I FK +++ + P+ AQ++ + D N I L G+ GKST++
Sbjct: 313 DVEVEVNGNISFKNVKFSYPTRPD--AQVL--KGISFDVQNGECIALVGASGSGKSTVVQ 368
Query: 274 MFL 282
+ L
Sbjct: 369 LLL 371
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.1a protein.
Length = 1263
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 94 EVKQQIGNQIYFK*IRYKMLSIPERAAQIIDTQEQQLDEINSRTIFLAGSKNVGKSTLLH 273
+V+ ++ I FK +++ + P+ AQ++ + D N I L G+ GKST++
Sbjct: 372 DVEVEVNGNISFKNVKFSYPTRPD--AQVL--KGISFDVQNGECIALVGASGSGKSTVVQ 427
Query: 274 MFL 282
+ L
Sbjct: 428 LLL 430
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.2 protein.
Length = 1263
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 94 EVKQQIGNQIYFK*IRYKMLSIPERAAQIIDTQEQQLDEINSRTIFLAGSKNVGKSTLLH 273
+V+ ++ I FK +++ + P+ AQ++ + D N I L G+ GKST++
Sbjct: 372 DVEVEVNGNISFKNVKFSYPTRPD--AQVL--KGISFDVQNGECIALVGASGSGKSTVVQ 427
Query: 274 MFL 282
+ L
Sbjct: 428 LLL 430
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 145 KMLSIPERAAQIIDTQEQQLDEINSRTIF--LAGSKNVGKSTLLHMFLEKLETP 300
K + AA T Q + E N T+ L G KNVG T L+ +EK P
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCLLGYKNVGTKTHLNCQMEKRANP 617
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 145 KMLSIPERAAQIIDTQEQQLDEINSRTIF--LAGSKNVGKSTLLHMFLEKLETP 300
K + AA T Q + E N T+ L G KNVG T L+ +EK P
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCLLGYKNVGTKTHLNCQMEKRANP 617
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 145 KMLSIPERAAQIIDTQEQQLDEINSRTIF--LAGSKNVGKSTLLHMFLEKLETP 300
K + AA T Q + E N T+ L G KNVG T L+ +EK P
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCLLGYKNVGTKTHLNCQMEKRANP 617
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,044
Number of Sequences: 27780
Number of extensions: 318276
Number of successful extensions: 864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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