Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h02
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   2.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.3  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   7.5  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   7.5  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    25   9.9  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   9.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   9.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  

>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 455 KLPHTIAHAKHQCRRYIVYLLYSSACSVSHW 363
           K+P   A+A  Q  R IV+LL SS    S W
Sbjct: 89  KIPSRTANAIQQSNRVIVHLLSSSIKKHSEW 119


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 579 RRSRPRKEAPNQVKKKYSLKGDRTFDAFHIRRQLINMTRVSEASTHHST 433
           R+ +P + AP       +L  D TF  F + +    ++RVS  S  HS+
Sbjct: 39  RKLKPSRTAPKPPAINTNLAED-TFSGFPLSQSRTTVSRVSLGSRQHSS 86


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 546 GWEPLCGACFFGKPRPLEHWFIRW 617
           G +P+CG  F G+P   +  F R+
Sbjct: 420 GVKPVCGQLFMGEPNSADKIFFRF 443


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 302 VLGIVSNVKFEVVTFDREPLANDLHYMLMSKEDKLY 409
           V+G+ S+ +   V F + P   D+ Y +  +++KL+
Sbjct: 214 VIGLKSHGEHVEVNFGQNPFLYDIDYAIQMEKNKLF 249


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 98  VMADGDAPELPKHMTFSKSDVPL 166
           V  DGD+ ELP  +   KS+ P+
Sbjct: 111 VTVDGDSHELPSRIKTQKSESPI 133


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 321 TSNSRWSLSIANPWPM 368
           + NSRW + + N WP+
Sbjct: 42  SGNSRWVIGVNNKWPI 57


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 308 GIVSNVKFEVVTFDREPLANDLHYMLMSKEDKLYIDDIDV 427
           G++SN++ +++ F+R   +   HY  + K      +++D+
Sbjct: 400 GVISNIQTKILNFERAIPSEMKHYFEILKAGNGLPEELDI 439


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 195 VSKKSSNAPINGTSDFENVMCFGSSGASPSAI 100
           V   SS+ P + +SDF + +   SSG S S+I
Sbjct: 538 VLSSSSSIPTSSSSDFSSSITTISSGISSSSI 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,940
Number of Sequences: 5004
Number of extensions: 51302
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)