Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17g16
(428 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 31 0.076
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 2.9
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 26 2.9
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 3.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 3.8
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 5.0
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 25 5.0
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 5.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 6.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 24 8.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 24 8.7
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 31.1 bits (67), Expect = 0.076
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -1
Query: 308 VIFFDVPENHAVFAGVFVQIAEVQKCTGFVNRF-TTDYDRVVKTTVRMLAYFFKFCQVSF 132
++ F VP A++ F++ A V + F+ + TTD VK + A F +SF
Sbjct: 168 LVKFRVPFTRAIW---FIRCAGVNEARSFLRKVQTTDITEWVKNWTDVAAGFL----ISF 220
Query: 131 ISNYMTIDIY 102
IS+++ DIY
Sbjct: 221 ISSFLNADIY 230
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 299 FDVPENHAVFAGVFVQIAEVQKCTGFVNR 213
F + + A AGVF+ E + C ++NR
Sbjct: 175 FQLSKGEATKAGVFLNTVETKDCMSWLNR 203
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 2.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 223 KPVHFWTSAICTNTP 267
K V FWTS +CT P
Sbjct: 262 KNVRFWTSELCTQCP 276
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -2
Query: 322 FGQIPSSSLTCLKTMLYSQEYSYKSQRSKNVRASLTDLPQTMIVS*KQPYAC 167
FG I SS L C S+ Y + + R D M+V K+ + C
Sbjct: 407 FGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVC 458
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 44 RLNWSSNVDTRKTFSVSFTHICR 112
R WS+ +D+ ++F VSF IC+
Sbjct: 495 RNEWSNFLDSVQSFPVSFHSICK 517
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 401 YLYKLHCYTLSIYSLLLTHSR 339
+LY+LH +T +YSL H++
Sbjct: 207 FLYELHGHTSFVYSLTYIHNQ 227
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 39 LFA*IGRQMLIRERHFLFLLLIYVDCHIVGDK 134
+FA +G M + R L + Y DC +GD+
Sbjct: 50 VFAPLGAGMFVASRRVKELRIDYTDCMNIGDE 81
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 183 FHDTIIVCGKSVNEARTFLDLCDLYEYSCEYSMVFRHVKED 305
FH+ + ++VN TF Y+ + +YS+VF V +D
Sbjct: 32 FHEAFLSEQRTVNNTVTFDRYTMQYQEATQYSIVFVVVFQD 72
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 203 DYDRVVKTTVRMLAYFFKFCQVSFISNYMTIDIYE*KKQK 84
DYDRV+ TT + FC+ + I ++ + E ++ K
Sbjct: 560 DYDRVLNTTESAIKILANFCEPT-IHEHLETALQELERSK 598
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 221 VNRFTTDYDRVVKTTVRMLAYFFK-FCQVSFI 129
+NRF++D RV + R+ +FF+ Q+ F+
Sbjct: 1002 LNRFSSDVYRVDEVISRVFMFFFRNLFQIVFV 1033
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 397 YINYIVILYPYIRYF*PTPGPNSL--GFGQIPSSSLTC 290
Y+NY++ Y +YF G N + G IP +++ C
Sbjct: 369 YLNYMLFAYYVPQYFQRIRGDNPIMSGVHTIPCAAVLC 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,429
Number of Sequences: 5004
Number of extensions: 35836
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -