Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g16
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0958 + 9532423-9533202                                           28   3.7  
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564...    28   3.7  
07_01_0307 - 2194796-2199274                                           27   4.9  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    27   6.4  
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432...    27   6.4  
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665     27   6.4  
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562...    27   8.5  

>08_01_0958 + 9532423-9533202
          Length = 259

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 282 PCCIRRSIRTNRRGPKMYGLR*QIYHRL*SCR 187
           PCC R  +    RG   + LR ++ HR   CR
Sbjct: 126 PCCARLPVSIAVRGGLTFELRAEVSHRCTGCR 157


>05_07_0028 +
           27153663-27153932,27154966-27155175,27156220-27156414,
           27156491-27156840,27157198-27157423,27157524-27157692,
           27158145-27158990,27159647-27159818,27159934-27160052,
           27160117-27160155,27161033-27161157,27161250-27161309,
           27161471-27161542,27161980-27162114
          Length = 995

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 162 CEHAYGCFHDTIIVCGKSVNEARTFLDLCD 251
           C  AY C H T  +C KS+ +   +  + D
Sbjct: 905 CFQAYTCSHYTCPICSKSLGDMTVYFGMLD 934


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 117 HIVGDK-AHLTELKKICEHAYGCFHD 191
           H +G +    T L   C+H YGC HD
Sbjct: 159 HAIGKRLCFSTSLVDDCDHDYGCVHD 184


>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
            20480164-20481199,20481275-20481402,20481673-20481732,
            20481774-20481878,20481971-20482055,20482315-20482470,
            20482562-20482831,20482877-20483671,20483844-20483903,
            20484062-20485134
          Length = 1777

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 173  RMLAYFFKFCQVSFISNYMTI--DIYE 99
            R+  +F+  C VS   NY+TI  ++YE
Sbjct: 927  RLTVFFWHMCTVSLFLNYLTIQGEVYE 953


>05_06_0119 +
           25742277-25742434,25742976-25743061,25743146-25743223,
           25743919-25744031,25744094-25744171,25744941-25744949,
           25744981-25745082,25745165-25745714,25745941-25746146,
           25746868-25747031,25747157-25747310
          Length = 565

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 226 PVHFWTSAICTNTPANTAWFSGTSKK 303
           P + WT A CT+  +N  W    +KK
Sbjct: 514 PGYSWTIASCTDCESNIGWLFKATKK 539


>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
          Length = 727

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 287 ENHAVFAGVFVQIAEVQKCTG 225
           ENHA  A VFV++A++   TG
Sbjct: 452 ENHATVASVFVRLADLYNKTG 472


>07_03_1204 +
           24855052-24855210,24855411-24855974,24856157-24856225,
           24856304-24856426,24856733-24856864,24857143-24857266,
           24857547-24857614,24857849-24857991,24858615-24858722,
           24858826-24858901,24859442-24859578,24859660-24859819,
           24859901-24860080,24860159-24860275,24860540-24860695,
           24861209-24861379,24861479-24861591,24861669-24861792,
           24861961-24862056,24862139-24862201,24862299-24862364
          Length = 982

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 141 LTELKKICEHAYGCFHDTIIVC-GKSVNEARTFLDLCDL 254
           L  LK+IC + YG  H T I C   S N     ++L  L
Sbjct: 381 LRRLKRICSNIYGS-HPTFIFCTATSANPREHVMELAKL 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,457,201
Number of Sequences: 37544
Number of extensions: 199855
Number of successful extensions: 390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)