Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g15
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    35   5e-04
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    27   0.18 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.56 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
 Frame = +1

Query: 265 GYM-LGRTIGSGSYATV-----KVASSDRHNCQVAIKIISKFQAPGDYLKKFLPREIEVV 426
           GY+ +   IG G +  V     K+    R    VAIK +    A  D  +     E  ++
Sbjct: 631 GYITIEAIIGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLKPGSA--DKARNDFLTEASIM 688

Query: 427 KGLKHENLIRFLQAIET-THRVYIVMEYAENGSLLDIIR 540
              +H N+I FLQ + T ++ V I+ E+ ENGSL   +R
Sbjct: 689 GQFEHPNVI-FLQGVVTKSNPVMIITEFMENGSLDTFLR 726


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 448 LIRFLQAIETTHRVYIVMEYAENGSLL 528
           L++     +T  R+Y VMEY   G L+
Sbjct: 47  LVQLHSCFQTMDRLYFVMEYVNGGDLM 73


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 176 SARCQQSLRLRYIAVWKPKLKGN*RFLKATVTCLA 280
           S RC  +  LR+  +W+  L    R L AT  C A
Sbjct: 20  SVRCSAASGLRWFEIWRDSLPTKMRELNAT-ACAA 53


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 MLGRTIGSGSYATVKVASSDRHN 339
           MLG   G GS  T+ + + DR+N
Sbjct: 130 MLGSLFGCGSIWTMTMIAFDRYN 152


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 MLGRTIGSGSYATVKVASSDRHN 339
           MLG   G GS  T+ + + DR+N
Sbjct: 96  MLGSLFGCGSIWTMTMIAFDRYN 118


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 MLGRTIGSGSYATVKVASSDRHN 339
           MLG   G GS  T+ + + DR+N
Sbjct: 6   MLGSLFGCGSIWTMTMIAFDRYN 28


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 337 NCQVAIKIISKFQAPGDYLKKFLP 408
           +C   ++   K    GDY++++LP
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLP 451


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 363 DYFNSNLTIMSVARGHLNSCIGTGPNCSAKHVTVAF 256
           D  N+ +   + +    NSC+G+     +KH T  F
Sbjct: 360 DSMNAVIRNFNESENRRNSCLGSTETYYSKHNTQQF 395


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 148 PDVRTHDNVLGEMSAEPTATVHSGVEAKTERKLTVLESHGYML 276
           P +   DNV+   S      + S   A++E+ L   E+H + L
Sbjct: 704 PRIMDLDNVMCRTSGPRGVAIVSASTARSEQFLCRYEAHCFAL 746


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 531 HYTKRSAHR*DPW 569
           HY K S H+  PW
Sbjct: 323 HYRKPSTHKMAPW 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,755
Number of Sequences: 438
Number of extensions: 2944
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)