Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g10
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    29   0.48 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   5.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   5.9  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   7.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  

>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 160 LINKCGTNEVYKPCQFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCY 300
           +I     +E+ + C +Y     W  S       +L K ++H +DG Y
Sbjct: 75  IIENSNIDELKQQCFYYYLLKDWEKSETYSEQVSLPKNYQHLMDGYY 121


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 136 SKLIEGTALINKCGTNEVYKPC-------QFYEEYTCWTSSSKMERTRTLSKKFKHCVD 291
           SK++E  A++ K  ++ + K         Q  +   C    SK+ +TR+L K+F  C+D
Sbjct: 42  SKMLEPKAIVYKKNSSAIPKRVDNILLRSQKPKHIECLLVDSKITKTRSLLKRFGSCLD 100


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 160 LINKCGTNEVYKPCQFYEEYTCWTSSSKMERTRTLSKKFKHCV 288
           L + CG  +  + C F+ EY    S S  +  R  + + ++C+
Sbjct: 88  LFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCI 130


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 475 FXKVKTKSWHMYIERSEFIQFFSYKSVNCQGFFQFFCLYTSPLLYKD 335
           F K K  +  +  + S+F Q+ S  S   QGF   F  Y   L YK+
Sbjct: 447 FAKNKQPATKLVQQASDFDQYVSLYSGYLQGFSDNFRPYVELLPYKN 493


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = +1

Query: 205 FYEEYTCWTSSSKMERTRTLSKKFKHCVDGCYCDKGLVRSYSKGPCIEAGKCRDKKIEKI 384
           +YE+   W  +S+   + T+ +  K        + G+ +S++    +E     DKK +++
Sbjct: 178 YYEDGNVWLDASR-PISATVEETSKLYEVLAQVENGIQQSFN----VELSSLNDKKFKEL 232

Query: 385 LDNLPIYKKRI 417
              LP+ +++I
Sbjct: 233 RRQLPVTRQKI 243


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 387 KDFFNFFVSTLPRFYTRTFAV*TN 316
           KDF  F  S+L RFY ++ A  +N
Sbjct: 683 KDFVTFPTSSLLRFYRKSMATESN 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,930
Number of Sequences: 5004
Number of extensions: 36830
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)