Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g10
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    28   3.4  
11_06_0404 - 23153454-23154305,23154335-23155627                       27   6.0  
03_05_0675 + 26630466-26632070                                         27   6.0  

>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 166 NKCGTNEVY-KPCQFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCYCDKGLVRSYSKGPC 342
           N CG  ++  K C   E  TC       E+    SK  K+   GC+C K   RS  + PC
Sbjct: 452 NPCGCQQMCGKDCACVENGTC------CEKYCGCSKSCKNRFRGCHCAKSQCRS-RQCPC 504

Query: 343 IEAGK 357
             A +
Sbjct: 505 FAASR 509


>11_06_0404 - 23153454-23154305,23154335-23155627
          Length = 714

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 469 KVKTKSWHMYIERSEFIQFFSY 404
           K+ +  WH YI++ +F+Q F Y
Sbjct: 245 KIFSDPWHGYIDQYDFLQSFDY 266


>03_05_0675 + 26630466-26632070
          Length = 534

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +1

Query: 232 SSSKMERTRTLSKKFKHCVDGCYCDKGLVRSYS----KGPCIEAGKCRDKK--IEKILDN 393
           SSS   + +  SK FK  V  C C +   R  +    + P  +  + RD    +  +LD 
Sbjct: 283 SSSAARKKKKFSKAFKDMVSSCLCQEPAKRPSAEKLLRHPFFKGCRSRDYDYLVRNVLDA 342

Query: 394 LPIYKKR 414
           +P  ++R
Sbjct: 343 VPTVEER 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,945,402
Number of Sequences: 37544
Number of extensions: 202445
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)