Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g09
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    29   0.34 
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.77 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   3.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.2  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   7.2  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.5  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   9.5  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 240 GKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 395
           G   I K  + +   P  YAP  C    +A +  C T  LS +P D  K  R
Sbjct: 302 GLMAITKERFNKRVSPSVYAPTNCGNMYTASIFSCLTALLSRVPADELKGKR 353


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 231 CCCGKPPIVK--PCYKQPKIPESYAPRRCYIKPSAPVEGCTTYK 356
           CC   PP +   P +  P+I    +P  CY K   P  G T+Y+
Sbjct: 11  CCWVSPPSLTRLPAFPSPRI---LSPCYCYNKRIRPFRGLTSYR 51


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -1

Query: 253 MGGFPQQQDRHGQFGLMSPSMGFPSRRPDLIPAAGHGRHS 134
           MGG     D  G FG  +   G P    ++    G G H+
Sbjct: 146 MGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAGPHA 185


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 344  ASLYGG*WFYVASSRRVRLWDFWLLV 267
            +S+YG  W ++ S+  V  W  +LLV
Sbjct: 2200 SSVYGRSWAFMWSAHNVHKWAMFLLV 2225


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
 Frame = +3

Query: 276 PKIPESYAPRRC--------YIKPSAPVEGCTTYKLSYLPVDGCKNLRGEVKKPSPNIVP 431
           P+IP +Y P++            P+ P +   T +L  +P     NL  +V  P P   P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP-MPSRNVNNLGSQVNIPPPPATP 279

Query: 432 SCEP 443
           S  P
Sbjct: 280 SQPP 283


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 412 LRPTLYRAVNLWKGVPFKS 468
           LRP  Y+  N W G PF++
Sbjct: 347 LRPHAYQHFNTWMGDPFRA 365


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 284 DFWLLVTRLNNGRFPTAARSAWA 216
           D WLL   +N   F  A R AW+
Sbjct: 103 DLWLLEAFVNEENFVEAIRPAWS 125


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 375 DGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPV 491
           DGC  +R    + SP+   + +P  G T Q+     NP+
Sbjct: 121 DGCLTVRIIDHRQSPSADQTVQPQPGSTNQQQQNNTNPI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,431
Number of Sequences: 5004
Number of extensions: 57803
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)