Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g05
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   229   1e-61
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   226   2e-60
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   186   2e-48
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    30   0.24 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    29   0.42 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   0.98 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   6.9  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   6.9  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    25   6.9  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   6.9  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   6.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   9.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.1  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  229 bits (561), Expect = 1e-61
 Identities = 100/168 (59%), Positives = 135/168 (80%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   YVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 182
           YVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ 
Sbjct: 84  YVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVT 143

Query: 183 WGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKF 362
           +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +EDLIHEI+TVG  F
Sbjct: 144 YGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNF 203

Query: 363 KYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRRMV 503
           K A+NF+WPF+L++P GGWR +K  H+++GGD G R++ IN L+R+M+
Sbjct: 204 KQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  226 bits (552), Expect = 2e-60
 Identities = 98/168 (58%), Positives = 134/168 (79%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   YVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 182
           +VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA   ML++ EPY+ 
Sbjct: 83  FVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVT 142

Query: 183 WGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKF 362
           +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI+TVG  F
Sbjct: 143 YGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNF 202

Query: 363 KYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRRMV 503
           K A+NFLWPFKL++P GGWR +K  H+++GGD G R++ IN L+++M+
Sbjct: 203 KQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  186 bits (453), Expect = 2e-48
 Identities = 86/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   YVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 182
           +VP E KL FVIRI G+  + PK+RKVL+L RL +INN VFVR NKA   MLRI EPY+ 
Sbjct: 82  FVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVM 141

Query: 183 WGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKF 362
           +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG  F
Sbjct: 142 YGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHF 201

Query: 363 KYASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFGNREDKINDLLRRMV 503
           K  + FLWPF L         KK  H+ +G   G   ++IN+L+++ V
Sbjct: 202 KEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKKQV 249


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 195 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 371
           N KSV  +    G   L+G +I I+ +  ++ R+       VE +L H++  +    K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201

Query: 372 SNFLWPFK 395
           S F  PF+
Sbjct: 202 SGFFGPFR 209


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 424 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 290
           LR P   L  L+GH   +  L +SP  +     SST   +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 437 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 342
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 368 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 189
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 188 S 186
           S
Sbjct: 377 S 377


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = -1

Query: 427  FLRQPPVGLFNL---KGHRKLLAYLNFSP-TVKISWMRSSTQIMLCLWSLFSTMLLEVIG 260
            +LR+P +   N    KG   L+   +F+  T + S +  S    LC    F+    E IG
Sbjct: 854  YLRKPHMSRENFGISKGSGGLIGSFDFNKFTRQASKVHGSWISSLCSSQAFA----EFIG 909

Query: 259  IRCPLSLANPRL 224
             RC L L +PR+
Sbjct: 910  DRCELDLNDPRV 921


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -1

Query: 403 LFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGI 257
           LF+L G   L  ++ +  T+K SW     ++ +    L  +  ++++ I
Sbjct: 76  LFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 413 WLAQEDHSLCRRGRLW*PRRQDQRSSQED 499
           WL ++ H+   + +LW   R+DQ S  +D
Sbjct: 31  WLIKKGHATSTKKQLWAVLRRDQLSFYKD 59


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -3

Query: 476 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVF 300
           L+ +  KVS   +++G L+   ++I Q +    +   + +FS + D+  + + T N +F
Sbjct: 121 LMSSTDKVSRKTMISGALSRALAYINQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIF 179


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 150 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 281
           N  +I+ PY     GYP +K  + L YK    KLS   +PI +  I
Sbjct: 35  NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 383 QEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLST 246
           QE ++ L   S+++ L+D       ++ M+P+  N+  SD +TL T
Sbjct: 124 QETSKDLCRSSSTQHLLDHQTTDSTIIDMKPVSTNS-KSDVFTLYT 168


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -3

Query: 446 VDIMNGLLAPTTSWIVQFEGPQEITRVLELFSN-----SEDLMDEVLNTDNVVFMEPLLN 282
           ++I + L AP+ SW   +    E+  +L + S       + + +E+  TD  V    LL 
Sbjct: 763 LEIDSNLFAPSNSWFNSWHSRLELDSILAIISQFSLPVYKKMNEELSTTDEAV---KLLA 819

Query: 281 NAVGSD 264
           N+V +D
Sbjct: 820 NSVLND 825


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 371 RVLELFSNSEDLMDE--VLNTDNVVFMEPLLNN 279
           RV E+F +S DL++E  +   DNV   EP   N
Sbjct: 300 RVAEIFKDSPDLLEEFKLFLPDNVDSTEPSTPN 332


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -3

Query: 521  YKSIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 342
            +  ++  HP   +      + K+  + I++  L       VQ +   E+ ++  LF NSE
Sbjct: 1732 FYEVFFQHPSTNVYANDEGI-KIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFGNSE 1788

Query: 341  DLMDEVLN 318
            D+M + L+
Sbjct: 1789 DVMIKQLS 1796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,139
Number of Sequences: 5004
Number of extensions: 52341
Number of successful extensions: 142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)