Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g05
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    28   0.067
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 294 ASSQQCCWK*LVYVVHSAWRIHVCILTHGHSLSWG 190
           A++   CW  + Y+V  AW I    ++    L WG
Sbjct: 65  AAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWG 99


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 449 PVDIMNGLLAPTTSWIVQFEG 387
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 276 CWK*LVYVVHSAWRIHVCILTHGHSLSW 193
           CW  + Y++  AW +   +++    L W
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 276 CWK*LVYVVHSAWRIHVCILTHGHSLSW 193
           CW  + Y++  AW +   +++    L W
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPW 189


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 449 PVDIMNGLLAPTTSWIVQFEG 387
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 430 VFLRQPPVGLFNLKG 386
           +F   PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 277 LLEVIGIRCPLSLAN 233
           ++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 417 NHQLDCSI*RATGNYS 370
           N+  DC+I  +TGN++
Sbjct: 186 NYTTDCTIEYSTGNFT 201


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 159 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIV 284
           R+ +PY  W + N K    +V     A     R+ I  + I+
Sbjct: 106 RLLQPYPDWSWANYKDCSGIVSAYKIAIDKFDRLWILDSGII 147


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 136 FRRTNTPLFIWRSLNSCRTLRTFG 65
           F    TP+FI+ S N+   L   G
Sbjct: 96  FMMIKTPIFIYNSFNTGFALGNLG 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,814
Number of Sequences: 438
Number of extensions: 3648
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)