Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17g04
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p... 27 2.1
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 27 2.1
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 27 2.1
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S... 26 3.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 3.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.5
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 25 6.5
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 8.6
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 8.6
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.6
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.6
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ... 25 8.6
>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 205
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 335 LLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCYF 463
LL+P ++R S G LRN + ++D + + ++I + F
Sbjct: 25 LLNPVIAIRQLSHGSLRNSRSCRIDAKSNTLTKEIFPKINNEF 67
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 200 ILDQLQGASVEEKYCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPASSVRN 364
+L L+ + ++ L+ L ++ +I L+K+ +PL+LD +SSVR+
Sbjct: 62 LLGMLKHHNANQRQETLEKLTQYVLSHTSILTTSTALLLKLTSPLILDESSSVRD 116
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 335 LLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCYFH 466
L+D S ++ A S +LRN A+ +CD L + PLT H
Sbjct: 134 LIDNHSCIQTAVSHLLRNHQALFKYLCDYLRSGEF--PLTVLIH 175
>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 75 LQAKWVRFEKLRLVKSKTLWLAKRAMKKSNFQMIAKRMRFKR 200
+Q W + ++ + K + +AKRA ++N + +A+ M F++
Sbjct: 34 IQTTWAKAKEAQRFAEKLITMAKRANPQNNRKGLAEGMVFEK 75
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 434 DIMTPLTCYFHEHAESWIPDPISKSRDEDIDTFVQCVNLLLNLCESSDL 580
D + YFHEH + DP + +D+ T ++ + E ++L
Sbjct: 510 DALLNFIYYFHEHLQPCYNDPNNTFKDDVAKTLIESKKRKAIIIEGAEL 558
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +1
Query: 241 LRFANFGNVYRDSREY**SYKPGSC----KSCCSFIAGSC*FCEKCIIWYASKSICC 399
L+ N G+ ++ S KP C KSCCS SC EK K+ CC
Sbjct: 216 LKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCC 272
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 6.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 218 GASVEEKYCGLQTLAMFIE---IPENIDEVINQGLVKVAAPLLLDPASSVRN 364
G VE K +T F+E +P DE + G AAP LLD SS N
Sbjct: 459 GLVVENKK-NTETALSFLERNHLPNLQDETQHIGTATYAAPELLDAMSSQHN 509
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 479 SWIPDPISKSRDEDIDTF 532
SW+PD K+R D+ F
Sbjct: 75 SWVPDSFLKNRPRDLSVF 92
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 488 VSMILHVHENSRSTVS*YPDPSEN 417
+S I+HV++N + +P+PS+N
Sbjct: 133 LSYIIHVYQNLKDGDYEFPEPSQN 156
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 263 LPKFANRNTSLQHLLPATDLISFEPHSLCYHLKVALLH 150
+PKF + N L + + LI HSL +L+V +H
Sbjct: 450 IPKFCSSNLILTSAIYYSCLILIHRHSLTKNLQVNCVH 487
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 494 PISKSRDEDIDTFVQCVN 547
P+SKS++ D+ T +C+N
Sbjct: 1552 PLSKSQEMDMSTVAECLN 1569
>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 227 VEEKYCGLQTLAM-FIEIPENIDEVINQ-GL-VKVAAPLLLDPASSV 358
V++K C Q ++ +IE P+ DE++ Q G+ + VA LL SV
Sbjct: 111 VKQKGCAGQAYSLEYIEKPDKFDEIVKQDGISIIVARRALLQIIGSV 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,992
Number of Sequences: 5004
Number of extensions: 43281
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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