Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g04
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931...    35   0.043
07_03_1169 + 24501594-24502826                                         29   2.2  
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606...    29   3.8  
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    28   5.0  
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527...    28   5.0  
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743...    28   6.6  
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528...    28   6.6  

>03_04_0147 +
           17690840-17691687,17692328-17692532,17693048-17693199,
           17693306-17693597,17693807-17693962,17694561-17694764,
           17694875-17694987,17695078-17695192,17695293-17695382,
           17695463-17695666,17695764-17695859,17696094-17696216,
           17696308-17696400,17696477-17696641,17697179-17697268,
           17697356-17697520
          Length = 1036

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 24/86 (27%), Positives = 47/86 (54%)
 Frame = +2

Query: 176 SKENAVQTILDQLQGASVEEKYCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPASS 355
           S    ++++++ L     +     L+ +    ++ E I EVIN+   +  + + +DP   
Sbjct: 300 SSFTTIKSVMNNLYDGLKDVLLALLKNMDTREKVLEFIAEVINKNAGR--SRMQVDP--- 354

Query: 356 VRNASSGMLRNLSAVKLDICDSLMDQ 433
           +++ASSGM  NLSAV L +C+  +D+
Sbjct: 355 LKSASSGMFVNLSAVMLRLCEPFLDR 380


>07_03_1169 + 24501594-24502826
          Length = 410

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +2

Query: 221 ASVEEKYCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAV 400
           A+V      L   A   E    + ++ +   V +AAP L +  S  R A++GMLRN+ A 
Sbjct: 82  AAVTHLCVDLADAAAVAEALAPLTDITHVFYVALAAPHLAEARS--REANAGMLRNVLAA 139

Query: 401 KLDICDSLMDQDIMT 445
            +  C +L    + T
Sbjct: 140 VVPTCPALAHVALQT 154


>01_05_0162 +
           18759647-18759663,18760128-18760131,18760270-18760617,
           18760801-18761016,18763367-18763435,18763560-18764209,
           18764993-18765089,18765170-18765223,18765305-18765435,
           18766818-18767008,18767937-18768574
          Length = 804

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 287 IDEVIN-QGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKL 406
           IDE++   G V +   LL   +     A++G+LRN+++VKL
Sbjct: 57  IDEIMQFHGCVALIVSLLRSDSVRACEAAAGLLRNITSVKL 97


>08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-655735,
            656209-656411,656837-657292,657718-657805,657917-658017,
            658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 292  INILWNLYKHCQSLQTAILLFNTCSLQLI 206
            +N L  +Y  C  + +A LLF  CS++ I
Sbjct: 1051 VNSLITMYSRCGMMSSACLLFRACSVRSI 1079


>02_01_0706 +
           5270233-5270326,5270767-5270914,5271018-5271089,
           5271153-5271263,5271363-5271434,5271533-5271604,
           5272126-5272197,5272281-5272346,5272426-5272491,
           5272601-5272971,5273203-5273456,5273886-5274157,
           5274333-5274474,5275174-5275313,5275381-5275537,
           5275797-5275965,5276048-5276088
          Length = 772

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 239 YCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPAS 352
           +CGL  L+ F+       E +N G   V AP L DPA+
Sbjct: 589 HCGLARLSQFVSAIRTDSEALNSGKGYV-APELTDPAT 625


>05_07_0299 -
           29073900-29073984,29074125-29074158,29074269-29074351,
           29074457-29074607,29074853-29074957,29075099-29075168,
           29075374-29075410,29076732-29076843,29076956-29076983
          Length = 234

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 455 CYFHEHAESWIPDPISKSRDEDIDTFVQCVNLLLNLCESSDLAVK 589
           CY H    S IP PI+ S    +  ++ C   L    ESS +A +
Sbjct: 138 CYAHGKFASGIPYPITLSAVISLSGWLPCSRTLRGKMESSHIAAR 182


>03_02_0052 +
           5285061-5285106,5285711-5285754,5286317-5286539,
           5286664-5286827,5286918-5288144
          Length = 567

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = -2

Query: 579 KSELSH-KFNNKLTH*T-NVSISSSLDLEIGSGIH 481
           ++EL+H ++   +TH + N S+S S+ +E+GSG H
Sbjct: 528 QAELAHGEYKVTVTHPSLNTSVSQSVKVEMGSGSH 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,001
Number of Sequences: 37544
Number of extensions: 245052
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)