Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g03
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 67  GGTLQLDPDHPHHPRALGLRVHGG 138
           GG   LD  H HH     +  H G
Sbjct: 271 GGVYHLDNHHVHHANHHAILGHSG 294


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 473 MLYRGDVVPKDVNAAIAT 526
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 517 HRNHQNKENHPVRGLVPNWFQGGHQL 594
           H++H + + HP RG  P+   G H +
Sbjct: 319 HQHHPS-QYHPHRGSSPHHQHGNHTM 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,034
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)