Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17g01
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074...    35   0.055
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    30   1.6  
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     28   8.3  

>02_05_0364 +
           28304743-28304814,28305021-28305197,28307309-28307431,
           28307644-28308043,28308129-28308242,28308359-28308454,
           28308598-28308791
          Length = 391

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = -1

Query: 628 LAHKTGTNQMKDMGRRGRTVRIETDRVHKAHSMACKTTGMVHSTGNISACKARMVQNTVR 449
           L  K      +  GR+   +R++T ++H A S+A   T +    GN  + ++    NT+ 
Sbjct: 134 LKSKLANMVQRGCGRKREDIRLQTAQMHAALSVARLATAVARMVGNCQS-ESTNANNTIM 192

Query: 448 TVHMGRYKDRKAHM 407
           T  +G+ + RK H+
Sbjct: 193 TA-IGKDEHRKMHV 205


>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
            21420530-21420757,21420916-21421049,21421309-21421392,
            21421554-21421760,21421871-21422203,21422343-21422449,
            21422823-21422988,21423127-21423230,21423347-21423507,
            21423595-21424495,21424642-21424732,21424837-21425127,
            21425491-21425575,21425665-21425747,21427653-21427773,
            21427785-21428260
          Length = 1422

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 519  VLQAILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANAALW 641
            +L + +  LW L      VRPL P+ + W+    WAN   W
Sbjct: 1313 ILISFVLPLWNLFAGFLVVRPLIPIWWRWY---YWANPVSW 1350


>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 482 CRNVPRAVDHARRFASHTVGLVDPVRLDADRAAPAAHVL-HLVRASLVGQCRPVARALRT 658
           C   P  V   R   +H +GL++   +D D       ++  LV++ L G    + R L T
Sbjct: 281 CMKDPSFV-RGRNMVTHAIGLIESSSIDTDNFINGVRIIDSLVQSQLQGH-HALMRQLLT 338

Query: 659 GS 664
           GS
Sbjct: 339 GS 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,976
Number of Sequences: 37544
Number of extensions: 203733
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)