Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f24
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624... 144 4e-35
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 31 0.60
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 31 1.1
10_08_0631 - 19435796-19436452,19437237-19438130 30 1.8
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 30 1.8
12_02_0299 - 17051570-17052474,17053542-17053755 29 2.4
09_02_0070 - 3844270-3846228 29 3.2
07_03_0967 - 23023019-23023158,23023676-23023767,23024474-230247... 29 3.2
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 29 3.2
06_03_0429 - 20701107-20701534,20701628-20701847 29 4.2
10_01_0150 + 1747424-1747758,1748097-1748103 28 7.4
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 28 7.4
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 27 9.8
04_04_1442 + 33628102-33628246,33628352-33628494,33628618-336288... 27 9.8
>02_04_0655 +
24761323-24761424,24761565-24761675,24762361-24762472,
24763049-24763113,24763727-24763804,24764550-24764624,
24764747-24764899,24764988-24765122,24765325-24765495
Length = 333
Score = 144 bits (350), Expect = 4e-35
Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
Frame = +3
Query: 120 QQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL--NTKDIVLKAQVLAGG 293
QQ+R LN+HEY L+ +GI VP+ A + +E + + K+IV+K+Q+LAGG
Sbjct: 23 QQLRRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGG 82
Query: 294 RGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRR 473
RG GTFK+GL+GGV +V E A +A KML Q+LVTKQTG G+I + V + E+
Sbjct: 83 RGLGTFKSGLQGGVHIVKAEE-AESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN 141
Query: 474 EYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSG 617
E Y AI ++R+ GP+IIA S+GG +IED+A + PD I PID+ G
Sbjct: 142 EMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKG 189
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = +3
Query: 351 PEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYYVAIMMERSFNGPVIIA 530
PE++ D K L++L +Q G+ + ++ +++++FP ++ + + FN
Sbjct: 517 PEISADQREKYLQRLQQVQQQGSLLNVSHITGISQKQFPSQQPNPLL---QQFNSQSSSI 573
Query: 531 SSQGGVNIEDV 563
SSQ G+ + V
Sbjct: 574 SSQAGIGLGQV 584
>05_01_0498 +
4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -3
Query: 301 FPRPPARTCAFRTMSLVLSSVANLIASSLVLATLNLGTGI 182
F P + A +SLVL+ LI+SS+VLA L L GI
Sbjct: 110 FQHPNTASVAQLMVSLVLAMAGKLISSSIVLALLPLFCGI 149
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 331 PPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSL-VLATLN 197
PP P L +P P PP R C T L L SV L+A++L VL L+
Sbjct: 10 PPPPPPLPLPLPLPP-RNCPLATAVLALLSV--LLATALWVLLVLS 52
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 364 PATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASS 218
PA V R PP P + V P PPA T A T + + N +A++
Sbjct: 84 PAAPAVTPARPPPQQPAVAVAAP-PPATTMATATEEVAAPATGNPMANA 131
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 424 PAAPVCFVT-RSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPA 284
P P+ F T R P ++P L PP+ PFL P P PPA
Sbjct: 213 PWPPIPFCTPRPWFPPIPFLTPPPPPFLPFPLPPI-PFLTPPSPPPPA 259
>09_02_0070 - 3844270-3846228
Length = 652
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 430 IRPAAPVCFVTRS-CLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSL 254
I A+PV F S L + A+ +++ PP S P P P R +F T +
Sbjct: 26 IATASPVAFSFPSFSLRNLTLLGGASLRAISVSLPPPSSRALFPLPLPFPRNASFSTSFV 85
Query: 253 VLSSVANLIASSL 215
S A ASSL
Sbjct: 86 FASPAAARPASSL 98
>07_03_0967 -
23023019-23023158,23023676-23023767,23024474-23024720,
23024822-23025134
Length = 263
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 328 PLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSLVLATLNLG 191
P + F ++P PRPP+R AF ++ A A+SL L + G
Sbjct: 7 PAATFPRLPPPRPPSRP-AFAAALAAAAAAAAAAAASLTLTAKSAG 51
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 367 SPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSL 254
+PA S LT+ P SP +++ RPPART R + L
Sbjct: 5 TPAASATLTLLLPA-SPPMRLRARRPPARTSRSRPLLL 41
>06_03_0429 - 20701107-20701534,20701628-20701847
Length = 215
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -3
Query: 376 PAISPATS--GVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSLVLAT 203
PA SP +T TPP P P P P T S SS A A +L+LA
Sbjct: 145 PAASPIAKPPAAVTAATPPPPPPPPSPSPSPSPAPQEAATASAATSSSAATAAHALLLAA 204
Query: 202 L 200
+
Sbjct: 205 M 205
>10_01_0150 + 1747424-1747758,1748097-1748103
Length = 113
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 361 ATSGVLTIRTPPLSPFLKVPFPRPPARTC 275
+T+G + PP SP L R P RTC
Sbjct: 66 STAGAGAVACPPTSPRLTAASARAPPRTC 94
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 571 SAATSSMLTPP*DEAMMTGPLKLRSIIIAT*YSLRGNFLSVTMTMLQIR 425
SAAT ++ TP ++ L LRS+I++ + L +S T+T L +R
Sbjct: 526 SAATEAISTPSVAPGSLSSTLNLRSLILSGDFFLAA-VISCTLTKLVLR 573
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 521 DWTIETAFHHNCHVVFPAWE 462
D T A H NCH+VFP E
Sbjct: 5 DLTARMAAHMNCHLVFPLLE 24
>04_04_1442 +
33628102-33628246,33628352-33628494,33628618-33628831,
33628925-33629159,33629285-33629372,33629526-33629885
Length = 394
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 412 VCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPA 284
VC + C+ FP + PA S V+ + T + +P P PA
Sbjct: 306 VCQIALLCVQPFPNLRPAMSEVVLMLTMKTTEQSVIPAPVRPA 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,146,216
Number of Sequences: 37544
Number of extensions: 403570
Number of successful extensions: 1376
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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