Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f21
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    30   0.068
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   2.6  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   3.4  
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    25   3.4  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    24   5.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    23   7.9  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    23   7.9  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    23   7.9  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    23   7.9  

>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 30.3 bits (65), Expect = 0.068
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 239 SNSESNDQFFEGXEKLIEIWFT 304
           ++ E N   FEG EKL+E+WF+
Sbjct: 11  NSEEFNTSSFEGPEKLLELWFS 32


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 194 KNRNINVAMAETEIISNSESNDQFFEGXEKLIE 292
           KNRN+ V+ + T+ +    + ++F+E   KL+E
Sbjct: 703 KNRNVVVSESLTKSMEEVLTPEKFYERLSKLLE 735


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 135 REVGS*LNEIIIGKIRTKRVM*VAITIPFQQSERAGARY 19
           ++VG+ LNE ++G I   R M V++     + ++ G  +
Sbjct: 28  KDVGNALNEGVVGAIDATRKMVVSLGTVMPEIQKCGVTF 66


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 144 PPRREVGS*LNEIIIGKIRTKRV 76
           PPRR   S  NE++I   RT+R+
Sbjct: 6   PPRRNGNSKKNEVVITGGRTQRI 28


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 13  PNVTCAGSLALLERDGDSYLHYSFRPNFANNYFIQLTSD 129
           P V+  G L L   +G+ Y H   R N   NY  +  SD
Sbjct: 62  PLVSDDGKLVLTV-NGEIYNHLKLRENLKGNYKFKTYSD 99


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 97  QNSDEKSNVGSYHH-PFPAERASR 29
           +N  + + +G YHH PFP+   +R
Sbjct: 229 RNKIDDAVIGFYHHHPFPSSEIAR 252


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 159 TSGKNINKRVTXKIE 203
           T+GKN+NK+V  +++
Sbjct: 30  TNGKNVNKKVNAEVD 44


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 37  LALLERDGDSYLHYSFRPNFANNYFIQLTSDFSAWRLSFELQVEK 171
           +A L    ++ +  SF+ NF +NY   ++ D S  R+ F+L+  K
Sbjct: 241 IATLHGHKNTIMQASFQKNFGSNYLATVSRD-STCRV-FDLRAMK 283


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 88  PNFANNYFIQLTSDFSAWRLSFELQVEKILI 180
           P+FA  +F Q  S +    L  ELQ +++L+
Sbjct: 572 PDFAYEFFTQAFSIYEESVLDSELQYQQLLM 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,661
Number of Sequences: 5004
Number of extensions: 17802
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)