Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f21
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1346 + 26293846-26294511                                         27   3.0  
10_08_0701 + 19974253-19975026                                         27   4.0  
06_03_0161 - 17369081-17369670,17370745-17370760,17370974-173717...    26   6.9  

>08_02_1346 + 26293846-26294511
          Length = 221

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 254 YFHYLILSPFQPLR 213
           YFHY IL P++P R
Sbjct: 81  YFHYFILDPYKPQR 94


>10_08_0701 + 19974253-19975026
          Length = 257

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 67  YLHYSFRPNFANNYFIQLTSDFSAWRLSFELQVEKILIKG 186
           + H SF  +F  +  +QL   FSAW++ F+ + E+  ++G
Sbjct: 119 FSHASFSDDFGADRMMQL---FSAWKMVFKGKTEEEKVEG 155


>06_03_0161 -
           17369081-17369670,17370745-17370760,17370974-17371754,
           17371871-17371972,17372078-17372397
          Length = 602

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 7   VFPNVTCAGSLALLERDGDSYLHYSFRPNFANNYFIQLTSD 129
           ++ +  CA  + L   D  S++ Y+  PN A   F+++  +
Sbjct: 344 IYASTECAAGINLRPLDPPSHVSYALLPNIAYFEFLEVMDE 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,647,121
Number of Sequences: 37544
Number of extensions: 96841
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)