Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f21
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99171-8|CAB16315.1| 368|Caenorhabditis elegans Hypothetical pr... 29 0.50
Y12500-1|CAA73102.1| 368|Caenorhabditis elegans adenosylmethion... 29 0.50
Y12499-1|CAA73101.1| 368|Caenorhabditis elegans adenosylmethion... 29 0.50
AL023853-3|CAA19560.1| 368|Caenorhabditis elegans Hypothetical ... 29 0.50
AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical... 27 3.5
AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical... 27 3.5
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 26 6.2
U40426-5|AAF99947.1| 191|Caenorhabditis elegans Rho gdi protein... 26 6.2
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 26 6.2
U36431-1|AAD10299.1| 191|Caenorhabditis elegans Rho GDP dissoci... 26 6.2
Z78063-6|CAI91164.1| 189|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z78063-5|CAB01501.1| 228|Caenorhabditis elegans Hypothetical pr... 25 8.1
>Z99171-8|CAB16315.1| 368|Caenorhabditis elegans Hypothetical
protein F47G4.7 protein.
Length = 368
Score = 29.5 bits (63), Expect = 0.50
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 257 DQFFEGXEKLIEIWF 301
+ FFEG EKL+E+WF
Sbjct: 22 EYFFEGAEKLLELWF 36
>Y12500-1|CAA73102.1| 368|Caenorhabditis elegans adenosylmethionine
decarboxylase protein.
Length = 368
Score = 29.5 bits (63), Expect = 0.50
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 257 DQFFEGXEKLIEIWF 301
+ FFEG EKL+E+WF
Sbjct: 22 EYFFEGAEKLLELWF 36
>Y12499-1|CAA73101.1| 368|Caenorhabditis elegans adenosylmethionine
decarboxylase protein.
Length = 368
Score = 29.5 bits (63), Expect = 0.50
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 257 DQFFEGXEKLIEIWF 301
+ FFEG EKL+E+WF
Sbjct: 22 EYFFEGAEKLLELWF 36
>AL023853-3|CAA19560.1| 368|Caenorhabditis elegans Hypothetical
protein F47G4.7 protein.
Length = 368
Score = 29.5 bits (63), Expect = 0.50
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 257 DQFFEGXEKLIEIWF 301
+ FFEG EKL+E+WF
Sbjct: 22 EYFFEGAEKLLELWF 36
>AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical
protein D1007.5b protein.
Length = 402
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 64 SYLHYSFRPNFANNYFIQLTSDFSAWRLS 150
SY HYS + + N YF+ WR++
Sbjct: 76 SYWHYSLKFHLINPYFLSCVGLLLGWRVT 104
>AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical
protein D1007.5a protein.
Length = 477
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 64 SYLHYSFRPNFANNYFIQLTSDFSAWRLS 150
SY HYS + + N YF+ WR++
Sbjct: 76 SYWHYSLKFHLINPYFLSCVGLLLGWRVT 104
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 160 VARTTTSTQRSRKLTE*NNYWQNSDEKSNVGSYHHPFPAERASRRTLRSETLT 2
V TTT+T SR+ E + + E + P P+E++ R + + T T
Sbjct: 4960 VIETTTTTTVSREHFEPEDDHSHVVESQEYSASGSPVPSEKSVERVIETTTTT 5012
>U40426-5|AAF99947.1| 191|Caenorhabditis elegans Rho gdi protein 1
protein.
Length = 191
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 133 SAWRLSFELQVEKILIKGXHXKSKY*RRNG*NGDNIK 243
S +RLSF V++ + G H K K +R+G +N K
Sbjct: 98 SNYRLSFAFHVQREITSGLHYKHKV-KRSGITVENEK 133
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 160 VARTTTSTQRSRKLTE*NNYWQNSDEKSNVGSYHHPFPAERASRRTLRSETLT 2
V TTT+T SR+ E + + E + P P+E++ R + + T T
Sbjct: 4960 VIETTTTTTVSREHFEPEDDHSHVVESQEYSASGSPVPSEKSVERVIETTTTT 5012
>U36431-1|AAD10299.1| 191|Caenorhabditis elegans Rho GDP
dissociation inhibitor protein.
Length = 191
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 133 SAWRLSFELQVEKILIKGXHXKSKY*RRNG*NGDNIK 243
S +RLSF V++ + G H K K +R+G +N K
Sbjct: 98 SNYRLSFAFHVQREITSGLHYKHKV-KRSGITVENEK 133
>Z78063-6|CAI91164.1| 189|Caenorhabditis elegans Hypothetical
protein F45D3.4b protein.
Length = 189
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 211 VNISIFXVTLLLIFFPLVARTTTSTQR 131
+N S+F T+LL F TTT+T++
Sbjct: 1 MNFSLFFATVLLTAFAASKPTTTTTEK 27
>Z78063-5|CAB01501.1| 228|Caenorhabditis elegans Hypothetical
protein F45D3.4a protein.
Length = 228
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 211 VNISIFXVTLLLIFFPLVARTTTSTQR 131
+N S+F T+LL F TTT+T++
Sbjct: 1 MNFSLFFATVLLTAFAASKPTTTTTEK 27
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,012,952
Number of Sequences: 27780
Number of extensions: 96192
Number of successful extensions: 272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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