Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f21
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   1.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   5.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   5.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   5.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   5.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 106 NYWQNSDEKSNV 71
           NYWQ +D+K+++
Sbjct: 64  NYWQCNDKKTDI 75


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 123 FRLLCVEVVVRATSGKNINKRVTXKIEILTSQW 221
           F L+C+ +V + T+G  +      K   +  +W
Sbjct: 5   FMLVCLGIVCQGTTGNILRGESLNKSLPILHEW 37


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 295 YFDQFFXPFEKLIITFTI*YYLRFSHCDVNISIFXVTLLLIFF 167
           YF   F P   L+ +  I ++L ++     + I  VT +L FF
Sbjct: 303 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMI-GVTTMLNFF 344


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 295 YFDQFFXPFEKLIITFTI*YYLRFSHCDVNISIFXVTLLLIFF 167
           YF   F P   L+ +  I ++L ++     + I  VT +L FF
Sbjct: 272 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMI-GVTTMLNFF 313


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 295 YFDQFFXPFEKLIITFTI*YYLRFSHCDVNISIFXVTLLLIFF 167
           YF   F P   L+ +  I ++L ++     + I  VT +L FF
Sbjct: 323 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMI-GVTTMLNFF 364


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 295 YFDQFFXPFEKLIITFTI*YYLRFSHCDVNISIFXVTLLLIFF 167
           YF   F P   L+ +  I ++L ++     + I  VT +L FF
Sbjct: 272 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMI-GVTTMLNFF 313


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 123 FRLLCVEVVVRATSGKNINKRVTXKIEILTSQW 221
           F L+C+ +V + T+G  +      K   +  +W
Sbjct: 5   FMLVCLGIVCQGTTGNILRGESLNKSLPILHEW 37


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 123 FRLLCVEVVVRATSGKNINKRVTXKIEILTSQW 221
           F L+C+ +V + T+G  +      K   +  +W
Sbjct: 5   FMLVCLGIVCQGTTGNILRGESLNKSLPILHEW 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,348
Number of Sequences: 438
Number of extensions: 1264
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)