Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f19
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         29   2.2  
01_05_0135 + 18460416-18460482,18460614-18460942                       29   3.0  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    28   3.9  
04_01_0319 - 4291144-4293402                                           28   3.9  
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836...    27   6.8  
01_06_1476 + 37640278-37642551                                         27   9.0  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 FLLHLRIQPDVRNHPRATRACHTAHN 205
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 86  IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRACHTAHNLWFTVVT 226
           I+  KT      PR LLHL + P  RN    TR C    +L    ++
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 152 VGYEDVTRTGATANGPQSSG*QYCIFINFYPVLKFVI 42
           V  EDV R  A  N     G + C+F+  Y   KF I
Sbjct: 448 VNTEDVIRARANRNNNDDPGNRLCVFVRDYYCYKFQI 484


>04_01_0319 - 4291144-4293402
          Length = 752

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +2

Query: 356 IQPTSPLQTAVQLVVSLLANQSRQNMSYRVIDTKTAVLNDTFLLVTVGFL 505
           I+  SP+ TAV LV+  L+N +  +    V+ T+  +L  TFLL T+  L
Sbjct: 290 IRAVSPVFTAVSLVLVELSNVAGHHRRSDVVITR-VLLVATFLLETLSLL 338


>08_02_1329 -
           26182762-26183007,26183149-26183249,26183533-26183602,
           26183692-26183895,26186435-26186941,26188672-26188677
          Length = 377

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 269 ARNLIAVIVTEIIAPLAKTETPHRPLVVRIQPTSPL 376
           +R  + VI  E  AP+  T + H  L++R   TSP+
Sbjct: 196 SRQKVDVINLETTAPVVNTGSQHEALILRGTRTSPI 231


>01_06_1476 + 37640278-37642551
          Length = 757

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 360 NPQALFKLLSNLLSAYLPTSQDKICHTVLSIRRRPY*TIRSYSSR 494
           NP     LLS + S+  PT+  K   T++  R  P   + +YSSR
Sbjct: 450 NPSDAASLLSYINSSARPTATIKFQQTIIGTRPAP--VVAAYSSR 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,036
Number of Sequences: 37544
Number of extensions: 229866
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)