Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f17
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827...   108   3e-24
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           62   4e-10
04_01_0221 + 2795975-2796836,2797001-2797517,2797967-2798516           28   5.4  
01_01_0118 - 871481-872606,872795-872950,873051-873817                 28   5.4  
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835...    27   7.1  
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459     27   9.4  

>08_02_1223 -
           25381462-25381575,25381822-25382061,25382570-25382707,
           25383397-25383849,25384528-25385010
          Length = 475

 Score =  108 bits (259), Expect = 3e-24
 Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 7/148 (4%)
 Frame = +3

Query: 60  GIQNNVVPEQFTANFDLRIALNVDLKEFENMIQKWCTEAGRGVTYEFEQK----DPYTTP 227
           G   N+ P +     D+R+  +V  +  E  + +    + R +T+EF+QK    D +  P
Sbjct: 313 GFVMNLQPSEAEIGLDIRLPPSVHTEALEKRLAEEWAPSSRNLTFEFKQKTSVLDNFGKP 372

Query: 228 --TQLDDANIYWKAFKQTAEELGMSI-KPQTFTGGTDSRYLRELGIPALGFSPIHNTTPA 398
             T  D +N++W  F++  +  G  + KP+ F   TD+RY R LGIPA GFSP+ NT   
Sbjct: 373 AVTPADSSNVWWALFEEAVKRAGGKLGKPEIFPASTDARYFRVLGIPAFGFSPMTNTPIL 432

Query: 399 LHEHNEHLGLDVFINGIAVYQSMIRAVA 482
           LH+HNE L  D ++ GI +Y+S+IR +A
Sbjct: 433 LHDHNEFLSKDEYLKGIGIYESIIRTLA 460


>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
 Frame = +3

Query: 288 GMSIKPQTFTGGTDSRYLRELGIPALGFSPIHNTTPALHEHNE--HLGLDVFINGIAVYQ 461
           G   KP+  +  TDSR++R+LGIPALGFSP+ NT   LH++NE  HLGL +F  G  V  
Sbjct: 347 GKLAKPEILSSTTDSRFIRQLGIPALGFSPMTNTPILLHDNNEVNHLGLLLFNLGYNV-M 405

Query: 462 SMIRAVANA 488
             +R V N+
Sbjct: 406 LKLRDVLNS 414


>04_01_0221 + 2795975-2796836,2797001-2797517,2797967-2798516
          Length = 642

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 231 QLDDANIYWKAFKQTAEELGMSIKPQTFTGGTDS 332
           + D  N  W+  KQT + +G++I   TF+  T S
Sbjct: 165 EFDTYNNTWEQPKQTGDHMGININTVTFSTNTTS 198


>01_01_0118 - 871481-872606,872795-872950,873051-873817
          Length = 682

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 186 VTYEFEQKDPYTTPTQLDDANIYWKAFKQTAEELGMSI 299
           V+ + E+  PY    +LD A+ +W  F   ++E+  ++
Sbjct: 129 VSSDDEESSPYNIQVELDPASRWWSFFVNCSKEINNNV 166


>02_02_0255 +
           8357963-8358356,8358948-8359024,8359201-8359276,
           8359665-8359846,8360173-8360318,8360405-8360669,
           8360688-8361053,8361265-8361513
          Length = 584

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 69  NNVVPEQFTANFDLRIALNVDLKEFENMIQKWCTEAGRGVT 191
           +N+  +Q  A+FD      ++  EF N + +W  EA R VT
Sbjct: 326 SNLAADQVMADFDTSRNHFIEKGEFVNGMLRWLDEAKRTVT 366


>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
          Length = 867

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 75  VVPEQFTA--NFDLRIALNVDLKEFENMIQKWCTEAGR-GVTYEFEQKD 212
           ++P  F +  NFD ++A    L   EN  +K+C   G  G   E   K+
Sbjct: 551 IIPGDFVSIWNFDAKVAFQDALYATENFDEKYCIGVGSYGSVLELRSKE 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,179
Number of Sequences: 37544
Number of extensions: 286953
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)