Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f16
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 171 6e-44
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.9
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 3.3
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 4.4
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 26 4.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 4.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.4
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 7.6
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 171 bits (417), Expect = 6e-44
Identities = 82/165 (49%), Positives = 111/165 (67%), Gaps = 2/165 (1%)
Frame = +3
Query: 177 SKTETKPKKDVDPCRTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIK-DKDP 353
S T P+ + +TF+IYR+ + +PK+Q Y +D++ CG MVLDALIKIK ++DP
Sbjct: 8 SATSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDP 67
Query: 354 TLTFRRSCREGICGSCAINLQGMNCLSCITEI-PPAKTITILPLPHMYVIRDLVVDMTHF 530
TLTFRRSCREGICGSCA+N+ G N L+CI I K I PLPH ++++DLV D+T+F
Sbjct: 68 TLTFRRSCREGICGSCAMNINGSNTLACICNIKKDNKPTKIYPLPHCFIVKDLVPDLTYF 127
Query: 531 FNGYDSIRPYLVRKNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
+ Y SI P+L +ND + QS D K+ GLYEC+LC+C
Sbjct: 128 YKQYKSIEPWL--QNDNIPKDKEFYQSRADRAKLDGLYECILCAC 170
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 498 IRDLVVDMTHFFNGYDSIRPYLVRKNDGAIGKTQLAQSIKDNEKMVGLYECVLC 659
++ ++ +T+ F S+ P +V KND K + + IK +E + GL + VLC
Sbjct: 596 LQGYLIQLTYIFQ---SLSPTIV-KNDNESWKNIVMELIKASETIWGLIKDVLC 645
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 145 KSSDSLSGTIVRKQKRNQRKTWTLVGRSKYIASEV 249
+S S++ TI+ +K+N R +++ R++YI S +
Sbjct: 493 RSKSSIASTILDLRKQNPRNSYSKEKRAQYIGSNM 527
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 228 KIYRFGGILSKEQPKIQSYELDVST 302
+IY FGG+ S QPK + L+++T
Sbjct: 94 EIYIFGGVASDSQPKNDLWVLNLAT 118
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 366 RRSCREGICGSCAINLQGMNCLSCITEIPPAKTITI-LPLPHMYVIRDLVVD-MTHFFNG 539
R +CR I S +I+ S IT + + P+P + + L T+ +
Sbjct: 271 RENCRTDIYRSDSIHEYEEPLTSSITSLDSPHVLDENAPIPLLPKVVSLPDPRFTNVLSA 330
Query: 540 YDSI-RPYLVRKNDGAIGKTQLAQSIKDNEKMV 635
+D++ R YL+R+N + T Q ++ + ++V
Sbjct: 331 FDALTRTYLLRQNSKVVHATSQKQEMQTSRRVV 363
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 37 TSIFKECLNILLVLNEPPVI*KTSNRTC 120
T++ +E +++ +LN P + TSNR C
Sbjct: 56 TALLQEIISVYPLLNPPTLTGPTSNRVC 83
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 597 EFFQWLHRFSSQDT 556
EF WL FSSQDT
Sbjct: 52 EFLPWLEEFSSQDT 65
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +3
Query: 249 ILSKEQPKIQSYELDVSTCGKMVLDALIKIKDKDPT 356
++++ + +I+SYE++VS + + K+KDK+ T
Sbjct: 546 LINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEET 581
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/73 (20%), Positives = 27/73 (36%)
Frame = -3
Query: 571 FLTRYGRILS*PLKKCVMSTTRSLMTYIWGNGSMVMVLAGGISVMQDKQFIPCKLIAQEP 392
F YG I+ P K + S T ++ + G+ Q K P QE
Sbjct: 430 FFDAYGDIIVSPFKDMIYSVFECPKTLTQAVQQDTLISSFGVGYTQLKSIFPFAKWLQEA 489
Query: 391 QIPSRQDLRNVRV 353
+P+ + ++ +
Sbjct: 490 AVPNMASINDIGI 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,222
Number of Sequences: 5004
Number of extensions: 59620
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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