Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f16
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438    162   2e-40
11_06_0703 + 26444128-26446215,26446525-26447226                       28   6.0  
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    28   7.9  
09_04_0311 + 16585406-16585521,16585713-16586175                       28   7.9  
09_01_0011 + 291315-292277                                             28   7.9  
04_03_0643 + 18328807-18331969,18332560-18332627                       28   7.9  

>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
          Length = 617

 Score =  162 bits (394), Expect = 2e-40
 Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 3/152 (1%)
 Frame = +3

Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIK-DKDPTLTFRRSCREGICG 395
           + F++YR+       +P +QSY +D++TCG MVLD L KIK + D TL FRRSCREGICG
Sbjct: 381 KEFRVYRWSPDAPSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAFRRSCREGICG 440

Query: 396 SCAINLQGMNCLSCITEIPP--AKTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVR 569
           SC++ + G+N ++C+  +    +   T+ PLPHMYV+RDLVVD+T F+  Y S+ P+L R
Sbjct: 441 SCSMCIDGVNTVACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQYKSVEPWLKR 500

Query: 570 KNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
           K       T+ AQS ++ +++ GLYEC+LC+C
Sbjct: 501 KTKTKTETTEHAQSPEERKRLDGLYECILCAC 532


>11_06_0703 + 26444128-26446215,26446525-26447226
          Length = 929

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 579 GAIGKTQLAQSIKDNEKMVGLYE 647
           G +GKT LAQ I ++EK+ G ++
Sbjct: 200 GGVGKTTLAQQIYNDEKITGNFD 222


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 579 GAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
           G +GKT LAQ I  N+ +   ++ +L +C
Sbjct: 261 GGVGKTTLAQQICKNQMVKAHFDMILWAC 289


>09_04_0311 + 16585406-16585521,16585713-16586175
          Length = 192

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 426 CLSCITEIPPAKTITILPLPHMY 494
           C  C  ++PPA T   LP  H+Y
Sbjct: 67  CAVCTDDLPPAATACRLPCGHLY 89


>09_01_0011 + 291315-292277
          Length = 320

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 75  FKRTACNIENIEPDMPKLSERFHKIIRFSFRNYSSKTETKPKKDVDPCRTFKI 233
           F   A ++E  + D+PKL+++ HK+ R+ + N           D D  R F++
Sbjct: 144 FAALASSLERGDADLPKLADKVHKLKRW-YDNARLPQRCPTDDDDDTRRLFQL 195


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 579 GAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
           G IGKT +AQ I ++  +   ++C+L  C
Sbjct: 253 GGIGKTTMAQQICEDRVVRNHFDCILWIC 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,987,026
Number of Sequences: 37544
Number of extensions: 370985
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)