Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f16
(678 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ403007-1|ABD77140.1| 255|Homo sapiens succinate dehydrogenase... 175 9e-44
BC007840-1|AAH07840.1| 280|Homo sapiens succinate dehydrogenase... 175 9e-44
AL049569-5|CAB96822.1| 280|Homo sapiens succinate dehydrogenase... 175 9e-44
U17248-1|AAA81167.1| 280|Homo sapiens succinate dehydrogenase i... 174 3e-43
M32246-1|AAA35708.1| 262|Homo sapiens protein ( Human succinate... 174 3e-43
D10245-1|BAA01089.1| 262|Homo sapiens succinate-ubiquinone oxid... 174 3e-43
U17886-1|AAA80581.1| 281|Homo sapiens succinate dehydrogenase i... 171 1e-42
>DQ403007-1|ABD77140.1| 255|Homo sapiens succinate dehydrogenase
complex subunit B protein.
Length = 255
Score = 175 bits (427), Expect = 9e-44
Identities = 83/152 (54%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Frame = +3
Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIKDK-DPTLTFRRSCREGICG 395
+ F IYR+ + ++P +Q+YE+D++ CG MVLDALIKIK++ D TLTFRRSCREGICG
Sbjct: 31 KKFAIYRWDPDKAGDKPHMQTYEVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 90
Query: 396 SCAINLQGMNCLSCITEIPPA--KTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVR 569
SCA+N+ G N L+C I K I PLPHMYVI+DLV D+++F+ Y SI PYL +
Sbjct: 91 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 150
Query: 570 KNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
K++ GK Q QSI++ EK+ GLYEC+LC+C
Sbjct: 151 KDESQEGKQQYLQSIEEREKLDGLYECILCAC 182
>BC007840-1|AAH07840.1| 280|Homo sapiens succinate dehydrogenase
complex, subunit B, iron sulfur (Ip) protein.
Length = 280
Score = 175 bits (427), Expect = 9e-44
Identities = 83/152 (54%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Frame = +3
Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIKDK-DPTLTFRRSCREGICG 395
+ F IYR+ + ++P +Q+YE+D++ CG MVLDALIKIK++ D TLTFRRSCREGICG
Sbjct: 40 KKFAIYRWDPDKAGDKPHMQTYEVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 99
Query: 396 SCAINLQGMNCLSCITEIPPA--KTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVR 569
SCA+N+ G N L+C I K I PLPHMYVI+DLV D+++F+ Y SI PYL +
Sbjct: 100 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
Query: 570 KNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
K++ GK Q QSI++ EK+ GLYEC+LC+C
Sbjct: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCAC 191
>AL049569-5|CAB96822.1| 280|Homo sapiens succinate dehydrogenase
complex, subunit B, iron sulfur (Ip) protein.
Length = 280
Score = 175 bits (427), Expect = 9e-44
Identities = 83/152 (54%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Frame = +3
Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIKDK-DPTLTFRRSCREGICG 395
+ F IYR+ + ++P +Q+YE+D++ CG MVLDALIKIK++ D TLTFRRSCREGICG
Sbjct: 40 KKFAIYRWDPDKAGDKPHMQTYEVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 99
Query: 396 SCAINLQGMNCLSCITEIPPA--KTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVR 569
SCA+N+ G N L+C I K I PLPHMYVI+DLV D+++F+ Y SI PYL +
Sbjct: 100 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
Query: 570 KNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
K++ GK Q QSI++ EK+ GLYEC+LC+C
Sbjct: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCAC 191
>U17248-1|AAA81167.1| 280|Homo sapiens succinate dehydrogenase
iron-protein subunit protein.
Length = 280
Score = 174 bits (423), Expect = 3e-43
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Frame = +3
Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIKDK-DPTLTFRRSCREGICG 395
+ F IYR+ + ++P +Q+Y++D++ CG MVLDALIKIK++ D TLTFRRSCREGICG
Sbjct: 40 KKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 99
Query: 396 SCAINLQGMNCLSCITEIPPA--KTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVR 569
SCA+N+ G N L+C I K I PLPHMYVI+DLV D+++F+ Y SI PYL +
Sbjct: 100 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
Query: 570 KNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
K++ GK Q QSI++ EK+ GLYEC+LC+C
Sbjct: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCAC 191
>M32246-1|AAA35708.1| 262|Homo sapiens protein ( Human
succinate-ubiquinone oxidoreductase iron sulfur (Ip)
subunit mRNA, 3' end. ).
Length = 262
Score = 174 bits (423), Expect = 3e-43
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Frame = +3
Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIKDK-DPTLTFRRSCREGICG 395
+ F IYR+ + ++P +Q+Y++D++ CG MVLDALIKIK++ D TLTFRRSCREGICG
Sbjct: 22 KKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 81
Query: 396 SCAINLQGMNCLSCITEIPPA--KTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVR 569
SCA+N+ G N L+C I K I PLPHMYVI+DLV D+++F+ Y SI PYL +
Sbjct: 82 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 141
Query: 570 KNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
K++ GK Q QSI++ EK+ GLYEC+LC+C
Sbjct: 142 KDESQEGKQQYLQSIEEREKLDGLYECILCAC 173
>D10245-1|BAA01089.1| 262|Homo sapiens succinate-ubiquinone
oxidoreductase iron sulfur subunit protein.
Length = 262
Score = 174 bits (423), Expect = 3e-43
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Frame = +3
Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIKDK-DPTLTFRRSCREGICG 395
+ F IYR+ + ++P +Q+Y++D++ CG MVLDALIKIK++ D TLTFRRSCREGICG
Sbjct: 22 KKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 81
Query: 396 SCAINLQGMNCLSCITEIPPA--KTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVR 569
SCA+N+ G N L+C I K I PLPHMYVI+DLV D+++F+ Y SI PYL +
Sbjct: 82 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 141
Query: 570 KNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
K++ GK Q QSI++ EK+ GLYEC+LC+C
Sbjct: 142 KDESQEGKQQYLQSIEEREKLDGLYECILCAC 173
>U17886-1|AAA80581.1| 281|Homo sapiens succinate dehydrogenase
iron-protein subunit B protein.
Length = 281
Score = 171 bits (417), Expect = 1e-42
Identities = 83/153 (54%), Positives = 111/153 (72%), Gaps = 4/153 (2%)
Frame = +3
Query: 219 RTFKIYRFGGILSKEQPKIQSYELDVST-CGKMVLDALIKIKDK-DPTLTFRRSCREGIC 392
+ F IYR+ + ++P +Q+YE+D++ CG MVLDALIKIK++ D TLTFRRSCREGIC
Sbjct: 40 KKFAIYRWDPDKAGDKPHMQTYEVDLNNRCGPMVLDALIKIKNEVDSTLTFRRSCREGIC 99
Query: 393 GSCAINLQGMNCLSCITEIPPA--KTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLV 566
GSCA+N+ G N L+C I K I PLPHMYVI+DLV D+++F+ Y SI PYL
Sbjct: 100 GSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 159
Query: 567 RKNDGAIGKTQLAQSIKDNEKMVGLYECVLCSC 665
+K++ GK Q QSI++ EK+ GLYEC+LC+C
Sbjct: 160 KKDESQEGKQQYLQSIEEREKLDGLYECILCAC 192
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,342,757
Number of Sequences: 237096
Number of extensions: 2032574
Number of successful extensions: 4178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4162
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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