Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f16
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    29   0.054
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 181 KQKRNQRKTWTLVGRSKYIASEVFFQRNN 267
           K+  + RKTWT  G  +Y+A EV   + +
Sbjct: 514 KRLDHGRKTWTFCGTPEYVAPEVILNKGH 542



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 581 SIVFPHKIRSNTIVAIEKMCHVN 513
           +I FP  I  N    I+K+C  N
Sbjct: 583 AIEFPRSITRNATALIKKLCRDN 605


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
 Frame = +1

Query: 469 PYSHY-PICMSSETWW 513
           P++ Y P+C    TWW
Sbjct: 151 PFTTYTPVCEYDHTWW 166


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 84  TACNIENIEP 113
           T CN+EN++P
Sbjct: 57  TVCNMENVDP 66


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 432 SCITEIPPAKTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYL 563
           +C+T+I  A  IT L       ++ +++    +F  YD+ R  L
Sbjct: 161 NCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 204


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 432 SCITEIPPAKTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYL 563
           +C+T+I  A  IT L       ++ +++    +F  YD+ R  L
Sbjct: 161 NCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,100
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)