Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f13
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54216-5|CAA90946.1|   95|Caenorhabditis elegans Hypothetical pr...    50   1e-06
U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81039-3|CAB02775.1|  325|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U10438-4|AAA19085.2|  344|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z54216-5|CAA90946.1|   95|Caenorhabditis elegans Hypothetical
           protein T24H10.6 protein.
          Length = 95

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/92 (25%), Positives = 50/92 (54%)
 Frame = +1

Query: 199 INNINPVIDRIMEDESVEGVIMTNKDGCPIMTNVNAAGATNYALALHRFGVMVQTCVKEM 378
           +++    I R+  ++ V G+I+ +  G  I + +++    ++   L +     +T ++E+
Sbjct: 1   MSDFEETIRRLQSEKGVVGIIVVDSAGRVIHSTIDSDATQSHTAFLQQLCEKTKTSIREL 60

Query: 379 DPFDAVLVMRLHTKKKEIMVVPDPSFNIIVLQ 474
           D  + +  +RL TKK EIM+ PD    I+V++
Sbjct: 61  DSSNDLTFLRLRTKKNEIMIAPDKDHVIMVIK 92


>U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical
           protein F09F7.4b protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 91  KNLI**QDSFV*IEMKIVRAMLHEDGDEWLVNLSAKINNINPVIDRIMEDESVEGVIMT 267
           KNL   +DSF    ++ + A L +DG +W    +A +  ++P   ++   +  EG  M+
Sbjct: 239 KNLAQIRDSFKAKSVEEILASLEKDGSDWAKKQAATLGKMSPTSLKVTHRQITEGSKMS 297


>U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical
           protein F09F7.4a protein.
          Length = 386

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 91  KNLI**QDSFV*IEMKIVRAMLHEDGDEWLVNLSAKINNINPVIDRIMEDESVEGVIMT 267
           KNL   +DSF    ++ + A L +DG +W    +A +  ++P   ++   +  EG  M+
Sbjct: 262 KNLAQIRDSFKAKSVEEILASLEKDGSDWAKKQAATLGKMSPTSLKVTHRQITEGSKMS 320


>Z81039-3|CAB02775.1|  325|Caenorhabditis elegans Hypothetical
           protein C25D7.4 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +1

Query: 352 MVQTCVKEMDPFDAVLVMRLHTKKKEIMVVPDPSFNII 465
           +V   + ++DP D ++  ++ +K ++I++V +P F  I
Sbjct: 29  LVGEVLNKLDPIDRLIAWKVSSKFQKILMVMEPGFKEI 66


>U10438-4|AAA19085.2|  344|Caenorhabditis elegans Hypothetical
           protein B0280.7 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 378 HFLDASLYHNTESVQ-SQGVVRGTGCIHICHYRTSVFIRHDNALNRF 241
           H +  S    TE +   Q V     CI +CH +T+V+I  DN+L  F
Sbjct: 263 HIVKESCVLGTEILPIGQEVPVSRDCIFLCHPQTNVYI-CDNSLEEF 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,789
Number of Sequences: 27780
Number of extensions: 288388
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)