Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f11
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 60 2e-10
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 2.5
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 25 4.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 4.3
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 5.7
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe... 25 5.7
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 7.5
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.5
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 9.9
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Frame = +3
Query: 165 KIILRRLPPTMTEETFLEQVSP-IPEHDYFYFAKPDPTLG--NNLFSRAYINFVNVEDIF 335
K+++ LPPT+ E+ FL+ ++ +P ++ F+K T+G + L S AY+ F + +
Sbjct: 13 KVLVFNLPPTLPEQVFLQSINSFLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAVQ 72
Query: 336 LFRDKFDGYVFLDEKGGEYVGIVEYAPFQRI 428
F + G+ F+D+K Y IV AP+Q+I
Sbjct: 73 EFFRVYQGHTFIDKKNNTYRAIVTIAPYQKI 103
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 252 YFAKPDPTLGNNLFSRAYINFVNVEDIFLFRDKFDGYVFLDEK 380
++ + DP G N+F++ +NF +F+ D FLDEK
Sbjct: 859 HWQRVDPLPGPNVFTKFCLNFDITAKVFIDNGLLD---FLDEK 898
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 276 LGNNLFSR--AYINFVNVEDIFLFRDKFDGYVFLD 374
LGN + +R A++ + NV+D +K GY F+D
Sbjct: 43 LGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMD 77
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 210 FLEQVSPIPEHDYFYFAKPDP 272
FLE PIPE D+F + P
Sbjct: 166 FLETAGPIPEEDFFRVLETAP 186
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 187 GKRRRIIFVNGRCILDFLSLLLLMNVL 107
G ++ +IF N RC+ D +L L N+L
Sbjct: 75 GSQQSMIFTNNRCLSDKENLENLQNLL 101
>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 5.7
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = -3
Query: 413 CIFNYAYIFSTFFI*ENITVKFISEQKNIFHVNEIDIRSRK*VIAQSRVRFGKIKIVMLW 234
C N AY+ + F+I N F+ Q+ + + ++K + S ++F K V++
Sbjct: 2 CAINKAYLLTKFYISANSCAFFVKSQRKWTSPDLSEDVAQKFLETASEMKFDASKQVLV- 60
Query: 233 NRRYLLQKRFLSHRGR*TSKNYF 165
+ YL+ + R + N F
Sbjct: 61 HGSYLINMANADEQKREQAFNCF 83
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 7.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 166 FVNGRCILDFLSLLLLMNVLE 104
+ G C+ +F++ LL+NVL+
Sbjct: 217 YTYGSCLYNFMAFALLLNVLQ 237
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 213 LEQVSPIPEHDYFYFAKPDPTLGNNLFS 296
LEQ++PIP+ + A P+L N+ S
Sbjct: 457 LEQLTPIPKARWNQLANKHPSLSNSAAS 484
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 244 TIFILPNRTRLWAITYFLERISISLTWK 327
TIF +P LWAI L +SL+++
Sbjct: 345 TIFFVPCARTLWAICRHLRTCPLSLSFR 372
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 9.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +1
Query: 202 RKRFWSKYRLFQSMTIFILPNRTRLWAITY--------FLERISISLTWKIFFCSEINLT 357
R+ FW+ Y +F++ T I L + L R + S I FCSEI LT
Sbjct: 322 RRVFWTCY-IFETTTSLIFGTPPELGDLEIDCQLPSMDVLPRFTESSQGGIVFCSEIQLT 380
Query: 358 VMFS*MKK 381
++ + ++K
Sbjct: 381 IIKNEIRK 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,354
Number of Sequences: 5004
Number of extensions: 40907
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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