Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f11
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1092 + 24267737-24268641,24269005-24269884                       27   9.8  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    27   9.8  
01_01_1203 - 9684054-9684255,9686421-9686572,9686645-9686740,968...    27   9.8  

>08_02_1092 + 24267737-24268641,24269005-24269884
          Length = 594

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 120 NKSKDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDY 248
           +KSK KK K  +P     +  LP  + E T    +S +  H+Y
Sbjct: 405 SKSKSKKEKKSKPEVVNQISPLPELIAEPTDARSMSFVGTHEY 447


>04_04_1574 -
           34536744-34537136,34541247-34541405,34541497-34542411,
           34543642-34543731,34544324-34544390,34544483-34544676,
           34544770-34545510,34545596-34545661,34545783-34545908,
           34545978-34546073,34546153-34546521,34546602-34546724,
           34546802-34546906,34547394-34547531,34547665-34547760,
           34548018-34548275
          Length = 1311

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 ISLTWKIFFCSEINLTVMFS*MKK 381
           +S  WK F+CS  NLT+    M+K
Sbjct: 844 LSRKWKYFWCSHTNLTLNKGTMRK 867


>01_01_1203 -
           9684054-9684255,9686421-9686572,9686645-9686740,
           9686829-9687074,9688207-9688431
          Length = 306

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 306 INFVNVEDIFLFRDKFDGYVFLDEKGG 386
           +NF+NV DIFL  D+ D  ++L +  G
Sbjct: 141 MNFINVHDIFLDCDR-DSIIYLGKPDG 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,629
Number of Sequences: 37544
Number of extensions: 234864
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)