Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f11
(466 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121018-1|AAI21019.1| 218|Homo sapiens UPF3B protein protein. 127 2e-29
BC121017-1|AAI21018.1| 470|Homo sapiens UPF3 regulator of nonse... 127 2e-29
AY013251-1|AAG48511.1| 470|Homo sapiens hUPF3B protein. 127 2e-29
AF318576-1|AAG60691.1| 483|Homo sapiens UPF3X protein. 127 2e-29
AY013250-1|AAG48510.1| 476|Homo sapiens hUPF3A protein. 122 8e-28
AL160396-5|CAI15816.1| 476|Homo sapiens UPF3 regulator of nonse... 122 8e-28
AF318575-1|AAG60690.1| 452|Homo sapiens UPF3 protein. 122 8e-28
BC023569-1|AAH23569.1| 443|Homo sapiens UPF3 regulator of nonse... 103 2e-22
AL160396-6|CAM22288.1| 443|Homo sapiens UPF3 regulator of nonse... 103 2e-22
U37431-1|AAC50249.1| 330|Homo sapiens HOXA1 protein. 30 3.4
U10421-1|AAA86954.1| 335|Homo sapiens HOX A1 homeodomain protei... 30 3.4
S79910-1|AAB35423.2| 330|Homo sapiens HOXA1 protein. 30 3.4
BC032547-1|AAH32547.1| 335|Homo sapiens homeobox A1 protein. 30 3.4
AC004079-1|AAS00374.1| 335|Homo sapiens unknown protein. 30 3.4
>BC121018-1|AAI21019.1| 218|Homo sapiens UPF3B protein protein.
Length = 218
Score = 127 bits (307), Expect = 2e-29
Identities = 55/99 (55%), Positives = 74/99 (74%)
Frame = +3
Query: 129 KDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYI 308
+D+ + L+K+++RRLPPT+T+E E + P+PEHDYF F D +L ++++RAYI
Sbjct: 40 QDRNKEKKEALSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYI 99
Query: 309 NFVNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQR 425
NF N EDI LFRD+FDGYVFLD KG EY IVE+APFQ+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQK 138
>BC121017-1|AAI21018.1| 470|Homo sapiens UPF3 regulator of nonsense
transcripts homolog B (yeast) protein.
Length = 470
Score = 127 bits (307), Expect = 2e-29
Identities = 55/99 (55%), Positives = 74/99 (74%)
Frame = +3
Query: 129 KDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYI 308
+D+ + L+K+++RRLPPT+T+E E + P+PEHDYF F D +L ++++RAYI
Sbjct: 40 QDRNKEKKEALSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYI 99
Query: 309 NFVNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQR 425
NF N EDI LFRD+FDGYVFLD KG EY IVE+APFQ+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQK 138
>AY013251-1|AAG48511.1| 470|Homo sapiens hUPF3B protein.
Length = 470
Score = 127 bits (307), Expect = 2e-29
Identities = 55/99 (55%), Positives = 74/99 (74%)
Frame = +3
Query: 129 KDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYI 308
+D+ + L+K+++RRLPPT+T+E E + P+PEHDYF F D +L ++++RAYI
Sbjct: 40 QDRNKEKKEALSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYI 99
Query: 309 NFVNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQR 425
NF N EDI LFRD+FDGYVFLD KG EY IVE+APFQ+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQK 138
>AF318576-1|AAG60691.1| 483|Homo sapiens UPF3X protein.
Length = 483
Score = 127 bits (307), Expect = 2e-29
Identities = 55/99 (55%), Positives = 74/99 (74%)
Frame = +3
Query: 129 KDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYI 308
+D+ + L+K+++RRLPPT+T+E E + P+PEHDYF F D +L ++++RAYI
Sbjct: 40 QDRNKEKKEALSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYI 99
Query: 309 NFVNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQR 425
NF N EDI LFRD+FDGYVFLD KG EY IVE+APFQ+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQK 138
>AY013250-1|AAG48510.1| 476|Homo sapiens hUPF3A protein.
Length = 476
Score = 122 bits (293), Expect = 8e-28
Identities = 53/91 (58%), Positives = 71/91 (78%)
Frame = +3
Query: 159 LTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
L+K+++RRLPP +T+E EQ+ P+P HDYF F D +L +L+SRAYINF N +DI L
Sbjct: 67 LSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 126
Query: 339 FRDKFDGYVFLDEKGGEYVGIVEYAPFQRIS 431
FRD+FDGY+FLD KG EY +VE+APFQ+I+
Sbjct: 127 FRDRFDGYIFLDSKGLEYPAVVEFAPFQKIA 157
>AL160396-5|CAI15816.1| 476|Homo sapiens UPF3 regulator of nonsense
transcripts homolog A (yeast) protein.
Length = 476
Score = 122 bits (293), Expect = 8e-28
Identities = 53/91 (58%), Positives = 71/91 (78%)
Frame = +3
Query: 159 LTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
L+K+++RRLPP +T+E EQ+ P+P HDYF F D +L +L+SRAYINF N +DI L
Sbjct: 67 LSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 126
Query: 339 FRDKFDGYVFLDEKGGEYVGIVEYAPFQRIS 431
FRD+FDGY+FLD KG EY +VE+APFQ+I+
Sbjct: 127 FRDRFDGYIFLDSKGLEYPAVVEFAPFQKIA 157
>AF318575-1|AAG60690.1| 452|Homo sapiens UPF3 protein.
Length = 452
Score = 122 bits (293), Expect = 8e-28
Identities = 53/91 (58%), Positives = 71/91 (78%)
Frame = +3
Query: 159 LTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
L+K+++RRLPP +T+E EQ+ P+P HDYF F D +L +L+SRAYINF N +DI L
Sbjct: 43 LSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 102
Query: 339 FRDKFDGYVFLDEKGGEYVGIVEYAPFQRIS 431
FRD+FDGY+FLD KG EY +VE+APFQ+I+
Sbjct: 103 FRDRFDGYIFLDSKGLEYPAVVEFAPFQKIA 133
>BC023569-1|AAH23569.1| 443|Homo sapiens UPF3 regulator of nonsense
transcripts homolog A (yeast) protein.
Length = 443
Score = 103 bits (248), Expect = 2e-22
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = +3
Query: 159 LTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
L+K+++RRLPP +T+E EQ+ P+P HDYF F D +L +L+SRAYINF N +DI L
Sbjct: 67 LSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 126
Query: 339 FRDKFDGYVFLDEKGGEYVGIVE 407
FRD+FDGY+FLD K EY +E
Sbjct: 127 FRDRFDGYIFLDSKDPEYKKFLE 149
>AL160396-6|CAM22288.1| 443|Homo sapiens UPF3 regulator of nonsense
transcripts homolog A (yeast) protein.
Length = 443
Score = 103 bits (248), Expect = 2e-22
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = +3
Query: 159 LTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
L+K+++RRLPP +T+E EQ+ P+P HDYF F D +L +L+SRAYINF N +DI L
Sbjct: 67 LSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 126
Query: 339 FRDKFDGYVFLDEKGGEYVGIVE 407
FRD+FDGY+FLD K EY +E
Sbjct: 127 FRDRFDGYIFLDSKDPEYKKFLE 149
>U37431-1|AAC50249.1| 330|Homo sapiens HOXA1 protein.
Length = 330
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -3
Query: 416 GCIFNYAYIFSTFFI*ENITVKFISEQKNIFHVNEIDIRSRK*VIAQSRVRFGKIKIVML 237
G + Y Y+ + N T K ++E + FH N+ R+R+ IA S ++ + ++ +
Sbjct: 213 GKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAS-LQLNETQVKIW 271
Query: 236 WNRRYLLQKR 207
+ R + QK+
Sbjct: 272 FQNRRMKQKK 281
>U10421-1|AAA86954.1| 335|Homo sapiens HOX A1 homeodomain protein
protein.
Length = 335
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -3
Query: 416 GCIFNYAYIFSTFFI*ENITVKFISEQKNIFHVNEIDIRSRK*VIAQSRVRFGKIKIVML 237
G + Y Y+ + N T K ++E + FH N+ R+R+ IA S ++ + ++ +
Sbjct: 218 GKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAS-LQLNETQVKIW 276
Query: 236 WNRRYLLQKR 207
+ R + QK+
Sbjct: 277 FQNRRMKQKK 286
>S79910-1|AAB35423.2| 330|Homo sapiens HOXA1 protein.
Length = 330
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -3
Query: 416 GCIFNYAYIFSTFFI*ENITVKFISEQKNIFHVNEIDIRSRK*VIAQSRVRFGKIKIVML 237
G + Y Y+ + N T K ++E + FH N+ R+R+ IA S ++ + ++ +
Sbjct: 213 GKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAS-LQLNETQVKIW 271
Query: 236 WNRRYLLQKR 207
+ R + QK+
Sbjct: 272 FQNRRMKQKK 281
>BC032547-1|AAH32547.1| 335|Homo sapiens homeobox A1 protein.
Length = 335
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -3
Query: 416 GCIFNYAYIFSTFFI*ENITVKFISEQKNIFHVNEIDIRSRK*VIAQSRVRFGKIKIVML 237
G + Y Y+ + N T K ++E + FH N+ R+R+ IA S ++ + ++ +
Sbjct: 218 GKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAS-LQLNETQVKIW 276
Query: 236 WNRRYLLQKR 207
+ R + QK+
Sbjct: 277 FQNRRMKQKK 286
>AC004079-1|AAS00374.1| 335|Homo sapiens unknown protein.
Length = 335
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -3
Query: 416 GCIFNYAYIFSTFFI*ENITVKFISEQKNIFHVNEIDIRSRK*VIAQSRVRFGKIKIVML 237
G + Y Y+ + N T K ++E + FH N+ R+R+ IA S ++ + ++ +
Sbjct: 218 GKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAS-LQLNETQVKIW 276
Query: 236 WNRRYLLQKR 207
+ R + QK+
Sbjct: 277 FQNRRMKQKK 286
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,548,706
Number of Sequences: 237096
Number of extensions: 1274639
Number of successful extensions: 2047
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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