Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f11
         (466 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011411-1|AAR96203.1|  492|Drosophila melanogaster AT18503p pro...   117   7e-27
AY069867-1|AAL40012.1|  450|Drosophila melanogaster SD10857p pro...   117   7e-27
AE013599-3720|AAM68275.2|  489|Drosophila melanogaster CG11184-P...   117   7e-27
AE013599-3719|AAF47091.2|  492|Drosophila melanogaster CG11184-P...   117   7e-27
AY075582-1|AAL68387.1|  841|Drosophila melanogaster SD08161p pro...    37   0.015
AJ312282-1|CAC41644.1|  841|Drosophila melanogaster nuclear RNA ...    37   0.015
AE014296-2758|AAF49447.3|  841|Drosophila melanogaster CG4118-PB...    37   0.015
AE014296-2757|AAF49448.3|  841|Drosophila melanogaster CG4118-PA...    37   0.015
AY069792-1|AAL39937.1|  501|Drosophila melanogaster SD03464p pro...    28   5.4  
AE014298-1180|AAF46375.1|  501|Drosophila melanogaster CG1474-PA...    28   5.4  

>BT011411-1|AAR96203.1|  492|Drosophila melanogaster AT18503p
           protein.
          Length = 492

 Score =  117 bits (282), Expect = 7e-27
 Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
 Frame = +3

Query: 120 NKSKDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSR 299
           ++ KDKK K ++ + KI++R LPPTMTE  FL+QV P+PE+D +Y+ K D +LG     R
Sbjct: 17  SRRKDKKDKTNQ-IVKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADWSLGQEATCR 75

Query: 300 AYINF--VNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQ 422
           AYI+    ++ ++  FRD+FDGYVF+D KG EY+ IVEYAPFQ
Sbjct: 76  AYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQ 118


>AY069867-1|AAL40012.1|  450|Drosophila melanogaster SD10857p
           protein.
          Length = 450

 Score =  117 bits (282), Expect = 7e-27
 Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
 Frame = +3

Query: 120 NKSKDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSR 299
           ++ KDKK K ++ + KI++R LPPTMTE  FL+QV P+PE+D +Y+ K D +LG     R
Sbjct: 17  SRRKDKKDKTNQ-IVKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADWSLGQEATCR 75

Query: 300 AYINF--VNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQ 422
           AYI+    ++ ++  FRD+FDGYVF+D KG EY+ IVEYAPFQ
Sbjct: 76  AYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQ 118


>AE013599-3720|AAM68275.2|  489|Drosophila melanogaster CG11184-PC,
           isoform C protein.
          Length = 489

 Score =  117 bits (282), Expect = 7e-27
 Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
 Frame = +3

Query: 120 NKSKDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSR 299
           ++ KDKK K ++ + KI++R LPPTMTE  FL+QV P+PE+D +Y+ K D +LG     R
Sbjct: 17  SRRKDKKDKTNQ-IVKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADWSLGQEATCR 75

Query: 300 AYINF--VNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQ 422
           AYI+    ++ ++  FRD+FDGYVF+D KG EY+ IVEYAPFQ
Sbjct: 76  AYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQ 118


>AE013599-3719|AAF47091.2|  492|Drosophila melanogaster CG11184-PB,
           isoform B protein.
          Length = 492

 Score =  117 bits (282), Expect = 7e-27
 Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
 Frame = +3

Query: 120 NKSKDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSR 299
           ++ KDKK K ++ + KI++R LPPTMTE  FL+QV P+PE+D +Y+ K D +LG     R
Sbjct: 17  SRRKDKKDKTNQ-IVKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADWSLGQEATCR 75

Query: 300 AYINF--VNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQ 422
           AYI+    ++ ++  FRD+FDGYVF+D KG EY+ IVEYAPFQ
Sbjct: 76  AYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQ 118


>AY075582-1|AAL68387.1|  841|Drosophila melanogaster SD08161p
           protein.
          Length = 841

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 180 RLPPTMTEETFLEQVSPIPEHDY-------FYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
           +LP     + +   + P P H++       F+F + DPTL N  F   Y  ++N E +FL
Sbjct: 315 KLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSN--FYPCYYKYINTEHVFL 372

Query: 339 FRDKFD 356
            R+ FD
Sbjct: 373 VRNCFD 378


>AJ312282-1|CAC41644.1|  841|Drosophila melanogaster nuclear RNA
           export factor 2 (NXF2) protein.
          Length = 841

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 180 RLPPTMTEETFLEQVSPIPEHDY-------FYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
           +LP     + +   + P P H++       F+F + DPTL N  F   Y  ++N E +FL
Sbjct: 315 KLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSN--FYPCYYKYINTEHVFL 372

Query: 339 FRDKFD 356
            R+ FD
Sbjct: 373 VRNCFD 378


>AE014296-2758|AAF49447.3|  841|Drosophila melanogaster CG4118-PB,
           isoform B protein.
          Length = 841

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 180 RLPPTMTEETFLEQVSPIPEHDY-------FYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
           +LP     + +   + P P H++       F+F + DPTL N  F   Y  ++N E +FL
Sbjct: 315 KLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSN--FYPCYYKYINTEHVFL 372

Query: 339 FRDKFD 356
            R+ FD
Sbjct: 373 VRNCFD 378


>AE014296-2757|AAF49448.3|  841|Drosophila melanogaster CG4118-PA,
           isoform A protein.
          Length = 841

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 180 RLPPTMTEETFLEQVSPIPEHDY-------FYFAKPDPTLGNNLFSRAYINFVNVEDIFL 338
           +LP     + +   + P P H++       F+F + DPTL N  F   Y  ++N E +FL
Sbjct: 315 KLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSN--FYPCYYKYINTEHVFL 372

Query: 339 FRDKFD 356
            R+ FD
Sbjct: 373 VRNCFD 378


>AY069792-1|AAL39937.1|  501|Drosophila melanogaster SD03464p
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 141 SKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYF 251
           ++  +P   +  +  P  +TEE ++E++S I + D+F
Sbjct: 33  AEFKKPTAMVRHKNKPKILTEEKYIEEMSKIIQRDFF 69


>AE014298-1180|AAF46375.1|  501|Drosophila melanogaster CG1474-PA
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 141 SKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYF 251
           ++  +P   +  +  P  +TEE ++E++S I + D+F
Sbjct: 33  AEFKKPTAMVRHKNKPKILTEEKYIEEMSKIIQRDFF 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,374
Number of Sequences: 53049
Number of extensions: 403724
Number of successful extensions: 783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1559812275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)