Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f11
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical p...    63   8e-11
Z70780-12|CAA94820.2|  329|Caenorhabditis elegans Hypothetical p...    63   8e-11
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    31   0.54 
AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical ...    29   1.2  

>Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical
           protein F46B6.3b protein.
          Length = 368

 Score = 63.3 bits (147), Expect = 8e-11
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +3

Query: 165 KIILRRLPPTMTEETFLEQVSPIPEHDY-FYFAKPDPTLGNNLFSRAYINFVNVEDIFL- 338
           K++LRRLP  MTE   LEQ+SP+PE     YF   + +     ++   +NF    D  + 
Sbjct: 10  KVVLRRLPKYMTEHEVLEQISPLPEEVIGTYFHPANFSFDRCAYATLTVNFSEYCDSMME 69

Query: 339 FRDKFDGYVFLDEKGGEYVGIVEYAPFQRIS 431
           F  +FDGY+F+D +G +   +VE A  Q  +
Sbjct: 70  FERRFDGYIFVDSRGNDSAAVVEAASNQNFA 100


>Z70780-12|CAA94820.2|  329|Caenorhabditis elegans Hypothetical
           protein F46B6.3a protein.
          Length = 329

 Score = 63.3 bits (147), Expect = 8e-11
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +3

Query: 165 KIILRRLPPTMTEETFLEQVSPIPEHDY-FYFAKPDPTLGNNLFSRAYINFVNVEDIFL- 338
           K++LRRLP  MTE   LEQ+SP+PE     YF   + +     ++   +NF    D  + 
Sbjct: 10  KVVLRRLPKYMTEHEVLEQISPLPEEVIGTYFHPANFSFDRCAYATLTVNFSEYCDSMME 69

Query: 339 FRDKFDGYVFLDEKGGEYVGIVEYAPFQRIS 431
           F  +FDGY+F+D +G +   +VE A  Q  +
Sbjct: 70  FERRFDGYIFVDSRGNDSAAVVEAASNQNFA 100


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 428 NSLEGCIFNYAYIFST---FFI*ENITVKFISEQKNIFHV 318
           NS+    FN+A+IFS    +F   N+ + F+S   N FH+
Sbjct: 2   NSIHNTPFNFAHIFSDIGYYFHIINVVLSFVSVLMNTFHI 41


>AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical
           protein Y50D4B.4 protein.
          Length = 430

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 TLGNNLFSRAYINFVNVEDIFLFRDKFD 356
           T  NN F R Y+N    EDI +F+ K D
Sbjct: 383 TFFNNAFHRLYLNITLDEDIQIFKTKLD 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,910
Number of Sequences: 27780
Number of extensions: 219949
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)