Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f11
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   6.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.6  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 231 IPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDI 332
           I  ++Y Y    +    NN   + Y N +N+E I
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQI 122


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 231 IPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDI 332
           I  ++Y Y    +    NN   + Y N +N+E I
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQI 122


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 277 WAITYFLERISISLTWK 327
           WA+ Y L  + I L W+
Sbjct: 121 WALFYLLVSLRIDLPWR 137


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 277 WAITYFLERISISLTWK 327
           WA+ Y L  + I L W+
Sbjct: 174 WALFYLLVSLRIDLPWR 190


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 282 NNLFSRAYINFVNVEDI 332
           NN   + Y N +N+E I
Sbjct: 326 NNYNKKLYYNIINIEQI 342


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 282 NNLFSRAYINFVNVEDI 332
           NN +   Y N +N+E I
Sbjct: 328 NNNYKPLYYNIINIEQI 344


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 282 NNLFSRAYINFVNVEDI 332
           NN   + Y N +N+E I
Sbjct: 348 NNNCKKLYYNIINIEQI 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,243
Number of Sequences: 438
Number of extensions: 3402
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)