Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f09
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    25   3.9  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   5.2  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.2  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   6.8  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   6.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   9.0  

>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 145 PSPWKSIVNIY*VR--ISLEKLVPASEIRTPVHRSIR 41
           P  WK+++ +   R  ISL  +VP+S+    VHR +R
Sbjct: 79  PQYWKNLLELDYPRNLISLGFIVPSSKDGAKVHRELR 115


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 196 ITQIIILRV*FLLHDVIPSPWKSIVNI 116
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 410 AHSPPGVKWLLEPIDIYNVNAPHTLR 333
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 164 FIARCYSFTVEVNREHLLSTYFIRKIGTRQRDSNTSASLDTNAPD 30
           F +  Y F  +    +    +FI   GT+   +  +A+LD + PD
Sbjct: 201 FSSHTYKFVNDKGEFYYCKWHFITNQGTKGLTNEEAAALDGSNPD 245


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 31 SGAFVSSDALVFESRWRVPI 90
          S  F S D   + SRWR P+
Sbjct: 34 SEQFTSEDITTWRSRWRAPV 53


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 162 KNQTRKIIICVITGGRT 212
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 416 GRAHSPPGVKWLLEPIDIYN 357
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,253
Number of Sequences: 5004
Number of extensions: 36511
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)