Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f07
         (275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical pr...    27   1.9  
U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine deami...    26   4.4  
AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA ...    26   4.4  

>U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical
           protein B0034.5 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 65  NQLFECYFHFIKDKCIIN 118
           N+ F+CYFHFI   C  +
Sbjct: 41  NRCFKCYFHFILALCFFD 58


>U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine
           deaminase that acts onrna protein 2 protein.
          Length = 495

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 85  ITFEQLVTFFNLLGNHTY 32
           + FE+  TFF +L  HTY
Sbjct: 115 VKFEEKTTFFEMLREHTY 132


>AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA
           adenosine deaminase protein.
          Length = 495

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 85  ITFEQLVTFFNLLGNHTY 32
           + FE+  TFF +L  HTY
Sbjct: 115 VKFEEKTTFFEMLREHTY 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,987
Number of Sequences: 27780
Number of extensions: 37413
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)