Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f06
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    88   8e-20
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    24   1.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   2.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   2.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 87.8 bits (208), Expect = 8e-20
 Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
 Frame = +1

Query: 196 EIECK-GNITSKYCDISKLEDIERVFKWIEDNFGSVYVLVNCAGILYQGQITGVGDNPLS 372
           E++ K G +    CD+S   DI +V +W+E N G++ +L+N A I     +T   D  L 
Sbjct: 50  ELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINID--VTLQNDEVLD 107

Query: 373 VNQLVETLDVNLKGSILCARTAVECMKKYDIS-GHIININSLAG-HYVPFSSSMNLYAST 546
             ++    D+NL G     +  ++ MKK  I+ G I+NIN  +G + +P + +   Y ++
Sbjct: 108 WKKI---FDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLAS 164

Query: 547 KYAITAFTETLSQELAHFSNRIKVTSLSPGLTKTEMAA 660
           K A+T  T+ L  ELA   + IKV S+SP L +T+M A
Sbjct: 165 KCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTA 202


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 574 TLSQELAHFSNRIKVTSLSPGLTKTE 651
           TLSQ+ +HF++ ++  S+S  L   E
Sbjct: 34  TLSQDTSHFASLVRNASVSGNLDAPE 59


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 342 NNRRWRQSFKC---ESACRNFGRELERVY--FMCTDCC*MHEEIRH 464
           N R      KC   E  C N GREL+++    + T C   +E+ +H
Sbjct: 36  NGRILTNYIKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKH 81


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 342 NNRRWRQSFKC---ESACRNFGRELERVY--FMCTDCC*MHEEIRH 464
           N R      KC   E  C N GREL+++    + T C   +E+ +H
Sbjct: 36  NGRILTNYIKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKH 81


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 292 GSVYVLVNCAGILYQGQITGVGDNPLSVNQLVETLDVNLKGSIL 423
           G +  LV  AG    G I+G+G     ++  ++ + V+ KGSIL
Sbjct: 205 GKIDYLVAGAGT--GGTISGIGRKLKELSPNIKIIAVDPKGSIL 246


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 505 YVPFSSSMNLYASTKYAITAFTETLSQELAHFSNRIKV 618
           +VPFS+        KYA+      LS  L +F  R  V
Sbjct: 478 FVPFSAGPRSCVGRKYAMLKLKIVLSTILRNFRVRSDV 515


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 292 GSVYVLVNCAGILYQGQITGVGDNPLSVN 378
           GS++ +   A   Y   + G+   PLS+N
Sbjct: 138 GSIWTMTMIAFDRYNVIVKGLSGKPLSIN 166


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 331 YQGQITGVGDNP--LSVN---QLVETLDVNLKGSILCARTAVE 444
           Y   I  VG+N   L+V    +L + +DVNLK  I+     VE
Sbjct: 32  YNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVE 74


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 292 GSVYVLVNCAGILYQGQITGVGDNPLSVN 378
           GS++ +   A   Y   + G+   PLS+N
Sbjct: 104 GSIWTMTMIAFDRYNVIVKGLSGKPLSIN 132


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 292 GSVYVLVNCAGILYQGQITGVGDNPLSVN 378
           GS++ +   A   Y   + G+   PLS+N
Sbjct: 14  GSIWTMTMIAFDRYNVIVKGLSGKPLSIN 42


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 586 ELAHFSNRIKVTSLSPGLTKTEMAAHMDDGL 678
           EL  F + + + +  PGL  TE+   M + L
Sbjct: 336 ELGLFCSVVVIAADRPGLRNTELVERMHNKL 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,497
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)