Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f04
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 1.8
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 2.4
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 26 4.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 5.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 5.6
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 7.5
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 9.9
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 25 9.9
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 25 9.9
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 625 KDICIHNQEAVICILFLHH 569
KD+ + QE ++C FLHH
Sbjct: 273 KDLTSYTQEVIVCRKFLHH 291
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 322 LDE--EYIRKNFKLPQRALYLDPYRRPLITFP--MTQEDCKHFNLARKYKINQQILDGYL 489
LDE Y+ KNF+ +RAL +P +T+P + K + K +Q+L YL
Sbjct: 652 LDEAKRYMSKNFQPDKRALLFNPRTANDMTYPPSLFSSLIKEYTSLGDIKEAKQVLSTYL 711
Query: 490 D 492
+
Sbjct: 712 E 712
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 496 GESISAPSVFPYMKTKAEKQSEADDDEEII 585
G+S S + ++K+ E DDD+E+I
Sbjct: 136 GQSASKNKILDFLKSDKENLISGDDDQELI 165
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/80 (25%), Positives = 28/80 (35%)
Frame = +1
Query: 127 FNVFFGDSFQFCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPASAGPTTQ 306
F+ F F M G S L + A+ E+ RP S+GP+ Q
Sbjct: 1559 FSKFVAGDPNFDVMRPATVGPGPFGKVASQKNLTVQTNTNNAAMESFYSDRPTSSGPSYQ 1618
Query: 307 NDFQLLDEEYIRKNFKLPQR 366
N L +E + P R
Sbjct: 1619 NRTPLTGQESMNMGVYSPYR 1638
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 452 FLAKLKCLQSSCVIGKVIRGRLYGSKYNALCGNLKFFLMYSSSSNWKSF 306
F+ + CL S + +R L+GS + CG L + + WK +
Sbjct: 1663 FVDTMPCLLSKLEFDEELRIELFGSFWKEYCGELNI----NDPNTWKEY 1707
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 335 YSSSSNWKSF*VVGPADAGRGFVLASEDAPSRGTRQTSGRLD 210
+ S SN+KS G + G G + S RG+R+ G D
Sbjct: 917 FGSGSNYKSAPSRGVSHHGHGGMSGSHRGSQRGSRRGGGERD 958
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 391 VYTGPNTTPSVAT*SFS*CTPRRATGNHFEL 299
V GP++TP+++ S S P+ G HF L
Sbjct: 452 VVVGPDSTPTLSFTSGSEGIPKGVKGRHFSL 482
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 7.5
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPASAGP-TTQNDFQLLDEE 333
F T+ T EG+ S K ++P+V VP +A P+ P T QN ++ L+
Sbjct: 9 FSSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKA---PKHIQEQPWTMQNWWRHLNWL 65
Query: 334 YIRKNFKLPQRALY 375
+ F LP A+Y
Sbjct: 66 HCMLIFGLPMIAIY 79
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 585 IHITAS*LCIQMSFA*SNHQNATVHLA 665
++++ LC++ + N Q ATVHLA
Sbjct: 589 VYLSNCPLCLKFKLSKVNQQKATVHLA 615
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 124 CLNCFAYVSIIFLFVLIYLNFARKISCHFSAI 29
CL CF I++ + + FAR+ S FS I
Sbjct: 159 CLTCFLSSFILYAYHESWTKFARERSQEFSLI 190
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 373 YLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI---LDGYLDPGESI 507
Y P P + + D +H L R + + + L G+L+PGES+
Sbjct: 220 YQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESL 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,924
Number of Sequences: 5004
Number of extensions: 59405
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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