Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17f04
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447 30 1.9
10_08_0746 - 20266701-20266709,20266935-20267063,20267791-20268582 29 2.5
10_07_0106 - 12933918-12934041,12934164-12934486,12934584-129349... 29 2.5
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 29 2.5
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 29 2.5
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733... 29 3.3
11_01_0177 + 1406725-1406920,1407444-1408267 29 4.4
10_07_0109 + 12952293-12952952,12953049-12953402,12953494-129538... 29 4.4
10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243... 29 4.4
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 28 5.9
10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696 28 5.9
01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892 28 7.7
>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
Length = 607
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVCLVPRD 246
FCK SCC C SL LVC D
Sbjct: 68 FCKRCSCCICHQFDDNKDPSLWLVCASEND 97
>10_08_0746 - 20266701-20266709,20266935-20267063,20267791-20268582
Length = 309
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Frame = +1
Query: 214 SLPLVCLVPRDGASSEARTKPRPASAGPTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRR 393
SLPL L PR S A + A +T + + E + N R L Y +
Sbjct: 204 SLPLRVLSPRSAKGSLAAASSSASPARRSTSSSYASAAEYWCHGNADTAVRDAIL--YCK 261
Query: 394 PLITF--PMTQEDCKHFNLARKYKINQQILDGYL 489
IT P+ H + + +N Q+ D YL
Sbjct: 262 KSITSEGPLKWMQFSHLGTVQMFSLNYQLSDDYL 295
>10_07_0106 -
12933918-12934041,12934164-12934486,12934584-12934937,
12935029-12935646
Length = 472
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 616 CIHNQEAVICILFLHHHQLRFAFLPSFSYMGKRSAQILILR-DPSNR 479
C+ EA+I + HH L A P+ +YM R + L LR + NR
Sbjct: 300 CVSGSEALISRIRAWHHDLGGAISPNAAYMIIRGLKTLALRVEAQNR 346
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 465 PTNIGRLLGSRRINICAERFPIYE 536
PT++GRL R+N+C+E IY+
Sbjct: 32 PTDVGRLACVSRLNLCSENDEIYQ 55
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 244 DGASSEARTKPRPASAGPTTQND 312
+GASSE T+PRP A P T +
Sbjct: 43 EGASSEPETRPRPPPATPATAEE 65
>08_01_0764 -
7332969-7333870,7334044-7334369,7334712-7335384,
7336195-7336219
Length = 641
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVC 231
+CK SCC C + SL LVC
Sbjct: 155 YCKRCSCCICHKYDENKDPSLWLVC 179
>11_01_0177 + 1406725-1406920,1407444-1408267
Length = 339
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 190 GHHSGAKSSLPLVCLV-PRDGASSEARTK---PRPASAGPTTQNDFQLLDEEYIRKNFKL 357
G +G S L+ + P+ G ++AR G T +DFQL+D I F L
Sbjct: 144 GQDNGVDSDNSLIPMPGPKRGIGNQARVLIEFDMKIKNGETRDDDFQLIDGAIICSEFVL 203
Query: 358 PQR 366
P R
Sbjct: 204 PNR 206
>10_07_0109 +
12952293-12952952,12953049-12953402,12953494-12953816,
12953939-12954062
Length = 486
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 616 CIHNQEAVICILFLHHHQLRFAFLPSFSYMGKRSAQILILR-DPSNR 479
C+ EA+I + HH L A P+ +YM R + + LR + NR
Sbjct: 314 CVSGSEALISRIRAWHHDLGGAISPNAAYMIIRGLKTIALRVEAQNR 360
>10_07_0105 +
12922828-12923448,12923554-12923907,12924008-12924330,
12928324-12928401,12928760-12928883
Length = 499
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 616 CIHNQEAVICILFLHHHQLRFAFLPSFSYMGKRSAQILILR 494
C+ EA++ + HH L A P+ +YM R + L LR
Sbjct: 301 CVSGSEALVSRIRTWHHDLGGAISPNAAYMIIRGLKTLALR 341
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVC 231
FCK SCC C SL LVC
Sbjct: 347 FCKRCSCCICHLFDDNKDPSLWLVC 371
>10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696
Length = 693
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 481 GYLDPGESISAPSVFPYMKTKAEKQSEADDDEEIIYILQ 597
G LDP +I A ++F Y + + +SE D E++YI Q
Sbjct: 72 GLLDPVSNIVANTLFSYGRAVGDTRSECD---ELVYIPQ 107
>01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892
Length = 307
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 461 ILYFLAKLKCLQSSCVIGKVIRGRLYGSKYNAL 363
++ FLA L CL S +I + + R+ GS N L
Sbjct: 28 VVEFLASLLCLPMSTIINLLTKERMVGSMGNVL 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,031,493
Number of Sequences: 37544
Number of extensions: 386989
Number of successful extensions: 1052
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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