Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f04
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59111-1|AAC50945.1|  322|Homo sapiens dermatan sulfate proteogl...    31   3.7  
BC030958-1|AAH30958.1|  322|Homo sapiens epiphycan protein.            31   3.7  
AF110334-1|AAD28183.1| 1246|Homo sapiens APC2 protein protein.         30   8.6  

>U59111-1|AAC50945.1|  322|Homo sapiens dermatan sulfate
           proteoglycan 3 protein.
          Length = 322

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 95  HFFVCFNLFKFCTKNFMSFFSDIRQVDLTSN 3
           +F+  FN  K   KN  +  SD++++DLTSN
Sbjct: 147 YFYSRFNRIKKINKNDFASLSDLKRIDLTSN 177


>BC030958-1|AAH30958.1|  322|Homo sapiens epiphycan protein.
          Length = 322

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 95  HFFVCFNLFKFCTKNFMSFFSDIRQVDLTSN 3
           +F+  FN  K   KN  +  SD++++DLTSN
Sbjct: 147 YFYSRFNRIKKINKNDFASLSDLKRIDLTSN 177


>AF110334-1|AAD28183.1| 1246|Homo sapiens APC2 protein protein.
          Length = 1246

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 184  CEGHHSGAKSSLPLVCLVPRDGASSEARTKP-RPASAGPTTQNDFQLLDEEYIRK 345
            C GH SG  S   L     +    S ++T P  PA  GP     F L  E Y+++
Sbjct: 910  CSGHGSGTISPSELPDSPGQTMPPSRSKTPPLAPAPQGPPEATQFSLQWESYVKR 964


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,266,231
Number of Sequences: 237096
Number of extensions: 2227462
Number of successful extensions: 9536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9536
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)