Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f03
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.5  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   6.5  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 227 IRILKCRKPSTIVELQWHNDALFCTNMLRNWSTSIPEGQE--NWKTVVKGHLTRKKYSHK 400
           + I + +   TI+  QW  D++    ++  WS  +    E  +WKT ++  L+ K  S+ 
Sbjct: 733 VSIERSKNMCTIIRSQWVMDSVNNQRLMPQWSYLLFSKDEKYSWKTALES-LSAKSLSNL 791

Query: 401 KFEV 412
             E+
Sbjct: 792 LVEL 795


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 429 VESDYENISKYTGVKH*-HKYLKKGAVPSIFSWNMKPVSEETKS 557
           V S+ +  SK  G KH  H   KKG    +F + +   ++ TKS
Sbjct: 488 VVSNEDRTSKKAGKKHHRHHKKKKGGNKRVFGFKLHKYAKPTKS 531


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 286 VIVPLQFYDRRRFPTFKYSYSPILEYH 206
           VI     Y RR    +K   S +LEYH
Sbjct: 172 VIAKADMYTRRDLALYKTRISQVLEYH 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,787
Number of Sequences: 5004
Number of extensions: 53220
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)