Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f03
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0337 - 2591689-2593839                                           31   0.94 
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    28   6.7  
11_01_0138 - 1155553-1155681,1156431-1156503,1157214-1157437           27   8.8  
08_02_0070 - 11897089-11898150,11898389-11898644,11898755-118990...    27   8.8  

>12_01_0337 - 2591689-2593839
          Length = 716

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 480 HKYLKKGAVPSIFSWNMKPVSEETKSREVTYVIL 581
           H Y ++G + S + W  K + E  +  EVTY +L
Sbjct: 590 HAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVL 623


>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 62  LRATILSYQNFN*YY--EVLASRSPLNNHLRSPTAAEDEDF 178
           +    L Y N   YY   VLA++ P+ N+ RSP   E  DF
Sbjct: 822 MTTVFLRYDNLKIYYPNSVLATK-PIMNYYRSPDMGEGIDF 861


>11_01_0138 - 1155553-1155681,1156431-1156503,1157214-1157437
          Length = 141

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 492 KKGAVPSIFSWNMKPVSEETKSREVTYVIL 581
           KK  +PS F W   P +++ K+ E   V+L
Sbjct: 17  KKRLIPSCFEWGTVPATKKMKTEEDLEVLL 46


>08_02_0070 -
           11897089-11898150,11898389-11898644,11898755-11899059,
           11899149-11899550
          Length = 674

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 146 RSPTAAEDEDFKSIRFILEIMIF*YR*IRILKCRKP--STIVELQWHNDALFCTNMLRNW 319
           RS +  + +  K  RF    ++     +R+ KC++   +TIV  QW +    CTN LR  
Sbjct: 355 RSNSKLDLQKIKKTRFASHYLLL----LRLTKCQEALATTIVTNQWKDWMKGCTNDLRQQ 410

Query: 320 STSI 331
           + +I
Sbjct: 411 ARAI 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,418
Number of Sequences: 37544
Number of extensions: 281920
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)