Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f03
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    29   3.4  
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   7.9  

>U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical
           protein K07E3.2 protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 293 FCTNMLRN--WSTSIPEGQENWK 355
           F T +LRN  W+ +I EG E WK
Sbjct: 496 FATRLLRNCLWTAAIKEGTEGWK 518


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 414 ITSNFLCEYFFRVKWPLTTVFQFSCP 337
           ++++ + +Y   + WPL+ +F  SCP
Sbjct: 101 MSTDVIVDYLGNIHWPLSAIFTSSCP 126


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 533 FHIP*KYRWYSTFLEIFMLMFDTCVFT 453
           FHIP KY+W ST      L+    V+T
Sbjct: 5   FHIPEKYQWASTLFVHVALIAGVAVYT 31


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 384  KSIHTKSSRLCHKLFVESDYENISKYTGVKH*HKYLKKGAVPSIFSWNMK-PVSEETKSR 560
            K++  K S+  H +F   + E +S     +H  +YL+   +PS F+   K P++  +K  
Sbjct: 2507 KALFDKESQQIH-VFYTGELEKLSSNDAREHCERYLEPHKIPSTFNGIDKFPLTGNSKID 2565

Query: 561  EVTYVILEKEL 593
             +  + L K L
Sbjct: 2566 TLKLMELVKNL 2576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,264
Number of Sequences: 27780
Number of extensions: 288185
Number of successful extensions: 691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)