Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f01
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.04c |||mitochondrial copper ion transport protein|Schiz...    28   0.90 
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    26   3.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   3.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.4  

>SPCC1672.04c |||mitochondrial copper ion transport
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 350 GPCAYEISQFLQCAS-SRDNLQECEAFNEALRECK 451
           G C + + Q+L+C    R+N +EC    +   +C+
Sbjct: 18  GECTHVMKQYLECIKVKRENQEECRLLAKKYLQCR 52


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 383 QCASSRDNL-QECEAFNEALRECKRR 457
           +C  ++D L +EC+   EA  ECKR+
Sbjct: 31  ECLKNKDELPEECKNLIEAYGECKRQ 56


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 387 VPAVETICRSARLSTRLYANVNVGTGYPNRKKVR 488
           +P  E +   AR ST   AN+ VG G  N    R
Sbjct: 234 IPGKENLIVDARPSTNAMANIAVGAGSENMDHYR 267


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 34  FQQCRMKYQILSFIVN*NVVSSGW 105
           FQQ +  Y+++  + N  V+S GW
Sbjct: 252 FQQSKEGYEVVHVVFNDYVLSGGW 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,838
Number of Sequences: 5004
Number of extensions: 39760
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)