Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f01
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical p...    41   6e-04
U40955-4|AAA81752.1|  297|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical
           protein C16C10.11 protein.
          Length = 154

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +2

Query: 266 ITGLFSGRRREEVTQA-----LPRDYQLGSEPNGPCAYEISQFLQCASSRDNLQECEAFN 430
           + G+F+G       QA      P      S  + PC +E  QF+ CA ++ ++  C  FN
Sbjct: 84  VGGMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQPCEFEWRQFVDCAQNQSDVSLCNGFN 143

Query: 431 EALRECKRR 457
           +  ++CK R
Sbjct: 144 DIFKQCKAR 152


>U40955-4|AAA81752.1|  297|Caenorhabditis elegans Hypothetical
           protein F48B9.2 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 149 VPVHAG*SANNESYCHPDETTF*FTIKLKIWYFILHC 39
           +P H   S+ N+ +  P+E    F I L + +F+L C
Sbjct: 238 LPEHTIESSINQEFSTPEELLIAFLIMLSLTFFVLMC 274


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +2

Query: 305 TQALPRDYQLGSEPNGPCAYEISQ-FLQCASSRDNLQECEA---FNEALRECKRRNRLP 469
           T A P   +   + +G  +   SQ ++QC++    ++ C     FNEA +EC  R+ +P
Sbjct: 683 TSAAPIGDRCSLDASGLFSLGCSQKYIQCSNGAAIVRRCGESLYFNEATQECTYRDEVP 741


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 101  GGSKTRYSRSNQHAPARPPPMVVTPTPQRS 190
            G S  R+    QH P++P P+V T TP R+
Sbjct: 1212 GSSPHRHQPIQQHIPSQPSPLVQT-TPVRA 1240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,115,612
Number of Sequences: 27780
Number of extensions: 229998
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)